WormBase Tree Display for Gene: WBGene00006926
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WBGene00006926 | SMap | S_parent | Sequence | C42D8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | vit-2 | Person_evidence | WBPerson71 | |||||
Sequence_name | C42D8.2 | ||||||||
Molecular_name | C42D8.2 | ||||||||
C42D8.2.1 | |||||||||
CE06950 | |||||||||
Other_name | CELE_C42D8.2 | Accession_evidence | NDB | BX284606 | |||||
Public_name | vit-2 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00006926 | |||||
WormFlux | gene | WBGene00006926 | |||||||
NDB | locus_tag | CELE_C42D8.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006926|UniProtKB=P05690 | |||||||
family | PTHR23345 | ||||||||
NCBI | gene | 180781 | |||||||
RefSeq | protein | NM_076467.7 | |||||||
SwissProt | UniProtAcc | P05690 | |||||||
UniProt_GCRP | UniProtAcc | P05690 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | vit | ||||||||
Allele (95) | |||||||||
Legacy_information | Structural gene for vitellogenin yp170B. | ||||||||
[C.elegansII] NMK. 4.9 kb transcript, specific to adult hermaphrodite intestine, encodes vitellogenin yp170B (67% identity to VIT-5). Extensive promoter analysis. [Speith et al. 1985b; MacMorris et al. 1994; BL] | |||||||||
Strain (11) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00036892 | ||||||||
00036893 | |||||||||
00036894 | |||||||||
00036895 | |||||||||
00036896 | |||||||||
00036897 | |||||||||
00036898 | |||||||||
00036899 | |||||||||
00109808 | |||||||||
00109809 | |||||||||
Ortholog (64) | |||||||||
Paralog | WBGene00006925 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006927 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006928 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006930 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | vit-2 encodes the vitellogenin homolog YP170; vit-2 is expressed in the adult hermaphrodite intestine and VIT-2 is secreted into the pseudocoelomic space before being taken up by developing oocytes; vit-2 expression is regulated in a sex-, stage-, and tissue-specific manner by the ELT-2/GATA and MAB-3 transcription factors. | Paper_evidence | WBPaper00003831 | |||||
WBPaper00004538 | |||||||||
WBPaper00032471 | |||||||||
WBPaper00001864 | |||||||||
WBPaper00003452 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 24 Mar 2014 00:00:00 | ||||||||
Automated_description | Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Located in cytoplasmic vesicle; vesicle lumen; and yolk granule. Expressed in embryonic cell; gonad; intestine; oocyte; and pseudocoelom. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C42D8.2 | |||||||
Corresponding_CDS_history | C42D8.2:wp176 | ||||||||
C42D8.2b:wp271 | |||||||||
Corresponding_transcript | C42D8.2.1 | ||||||||
Other_sequence (264) | |||||||||
Associated_feature (19) | |||||||||
Experimental_info | RNAi_result | WBRNAi00095269 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00042364 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095273 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063230 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001993 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063231 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr520 | ||||||||
Expr11396 | |||||||||
Expr12138 | |||||||||
Expr12674 | |||||||||
Expr16161 | |||||||||
Expr1015447 | |||||||||
Expr1032943 | |||||||||
Expr1146349 | |||||||||
Expr2018001 | |||||||||
Expr2036137 | |||||||||
Drives_construct (19) | |||||||||
Construct_product | WBCnstr00000145 | ||||||||
WBCnstr00012417 | |||||||||
WBCnstr00018820 | |||||||||
WBCnstr00021273 | |||||||||
WBCnstr00022596 | |||||||||
WBCnstr00034094 | |||||||||
WBCnstr00041719 | |||||||||
Regulate_expr_cluster | WBPaper00051305:vit-2(ac3)_downregulated | ||||||||
WBPaper00051305:vit-2(ac3)_upregulated | |||||||||
Antibody | WBAntibody00000018 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (323) | |||||||||
Interaction (317) | |||||||||
Map_info | Map | X | Position | -6.18804 | Error | 0.002606 | |||
Positive | Positive_clone (2) | ||||||||
Pseudo_map_position | |||||||||
Reference (114) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |