WormBase Tree Display for Gene: WBGene00006926
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WBGene00006926 | SMap | S_parent | Sequence | C42D8 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | vit | ||||||
Allele (95) | |||||||
Legacy_information | Structural gene for vitellogenin yp170B. | ||||||
[C.elegansII] NMK. 4.9 kb transcript, specific to adult hermaphrodite intestine, encodes vitellogenin yp170B (67% identity to VIT-5). Extensive promoter analysis. [Speith et al. 1985b; MacMorris et al. 1994; BL] | |||||||
Strain (11) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00036892 | ||||||
00036893 | |||||||
00036894 | |||||||
00036895 | |||||||
00036896 | |||||||
00036897 | |||||||
00036898 | |||||||
00036899 | |||||||
00109808 | |||||||
00109809 | |||||||
Ortholog (64) | |||||||
Paralog | WBGene00006925 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00006927 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00006928 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00006929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00006930 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | vit-2 encodes the vitellogenin homolog YP170; vit-2 is expressed in the adult hermaphrodite intestine and VIT-2 is secreted into the pseudocoelomic space before being taken up by developing oocytes; vit-2 expression is regulated in a sex-, stage-, and tissue-specific manner by the ELT-2/GATA and MAB-3 transcription factors. | Paper_evidence | WBPaper00003831 | |||
WBPaper00004538 | |||||||
WBPaper00032471 | |||||||
WBPaper00001864 | |||||||
WBPaper00003452 | |||||||
Curator_confirmed | WBPerson567 | ||||||
WBPerson1843 | |||||||
Date_last_updated | 24 Mar 2014 00:00:00 | ||||||
Automated_description | Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Located in cytoplasmic vesicle; vesicle lumen; and yolk granule. Expressed in embryonic cell; gonad; intestine; oocyte; and pseudocoelom. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C42D8.2 | |||||
Corresponding_CDS_history | C42D8.2:wp176 | ||||||
C42D8.2b:wp271 | |||||||
Corresponding_transcript | C42D8.2.1 | ||||||
Other_sequence (264) | |||||||
Associated_feature (19) | |||||||
Experimental_info | RNAi_result | WBRNAi00095269 | Inferred_automatically | RNAi_primary | |||
WBRNAi00042364 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00095273 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00063230 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001993 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00063231 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr520 | ||||||
Expr11396 | |||||||
Expr12138 | |||||||
Expr12674 | |||||||
Expr16161 | |||||||
Expr1015447 | |||||||
Expr1032943 | |||||||
Expr1146349 | |||||||
Expr2018001 | |||||||
Expr2036137 | |||||||
Drives_construct (19) | |||||||
Construct_product | WBCnstr00000145 | ||||||
WBCnstr00012417 | |||||||
WBCnstr00018820 | |||||||
WBCnstr00021273 | |||||||
WBCnstr00022596 | |||||||
WBCnstr00034094 | |||||||
WBCnstr00041719 | |||||||
Regulate_expr_cluster | WBPaper00051305:vit-2(ac3)_downregulated | ||||||
WBPaper00051305:vit-2(ac3)_upregulated | |||||||
Antibody | WBAntibody00000018 | ||||||
Microarray_results (21) | |||||||
Expression_cluster (323) | |||||||
Interaction (317) | |||||||
Map_info | Map | X | Position | -6.18804 | Error | 0.002606 | |
Positive | Positive_clone | C42D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
U32 | |||||||
Pseudo_map_position | |||||||
Reference (114) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |