WormBase Tree Display for Gene: WBGene00006782
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WBGene00006782 | SMap | S_parent | Sequence | C04F5 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | unc-46 | Paper_evidence | WBPaper00000031 | |||
Sequence_name | C04F5.3 | ||||||
Molecular_name | C04F5.3 | ||||||
C04F5.3.1 | |||||||
CE27791 | |||||||
Other_name | CELE_C04F5.3 | Accession_evidence | NDB | BX284605 | |||
Public_name | unc-46 | ||||||
DB_info | Database | AceView | gene | 5F576 | |||
WormQTL | gene | WBGene00006782 | |||||
WormFlux | gene | WBGene00006782 | |||||
NDB | locus_tag | CELE_C04F5.3 | |||||
NCBI | gene | 178897 | |||||
RefSeq | protein | NM_071964.5 | |||||
TREEFAM | TREEFAM_ID | TF320931 | |||||
TrEMBL | UniProtAcc | Q9GZD5 | |||||
UniProt_GCRP | UniProtAcc | Q9GZD5 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Acquires_merge | WBGene00015445 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | unc | ||||||
Reference_allele | WBVar00143011 | ||||||
Allele (38) | |||||||
Legacy_information | e177 : shrinker contracts both dorsally and ventrally when prodded slow good forward movement poor backing; slightly small. ES3 ME2. NA3 (e300 e642). | ||||||
[C.elegansII] e177 : shrinker contracts both dorsally and ventrally when prodded, slow, good forward movement, poor backing; slightly small. ES3 ME2. OA2: e300, e642. [Brenner 1974; McIntire et al. 1993; MT] | |||||||
Strain (163) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00088377 | ||||||
00088378 | |||||||
Ortholog (29) | |||||||
Structured_description | Concise_description | unc-46 encodes a type I transmembrane protein that contains a single motif similar to the LAMP (lysosomal associated membrane glycoprotein) domain; UNC-46 and UNC-47, the C. elegans vesicular GABA transporter, are required in GABAergic neurons for loading GABA into synaptic vesicles and thus, for all GABA-mediated behaviors; a rescuing UNC-46::GFP fusion protein localizes to synaptic varicosities in the dorsal and ventral nerve cords; UNC-46 and UNC-47 are mutually required for sorting/localization to synaptic vesicles; when overexpressed, unc-47 can rescue unc-46 mutant animals. | Paper_evidence | WBPaper00030788 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Jun 2008 00:00:00 | ||||||
Automated_description | Located in cytoplasmic vesicle and neuromuscular junction. Expressed in GLR and neurons. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C04F5.3 | |||||
Corresponding_transcript | C04F5.3.1 | ||||||
Other_sequence | Acan_isotig12346 | ||||||
Associated_feature | WBsf652609 | ||||||
WBsf999935 | |||||||
WBsf233650 | |||||||
Experimental_info | RNAi_result | WBRNAi00090126 | Inferred_automatically | RNAi_primary | |||
WBRNAi00039641 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028449 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089966 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010134 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089726 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090284 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr4785 | ||||||
Expr4786 | |||||||
Expr13159 | |||||||
Expr15441 | |||||||
Expr1021811 | |||||||
Expr1143737 | |||||||
Expr2017879 | |||||||
Expr2036015 | |||||||
Drives_construct | WBCnstr00001640 | ||||||
WBCnstr00008362 | |||||||
WBCnstr00008363 | |||||||
WBCnstr00012243 | |||||||
WBCnstr00020699 | |||||||
WBCnstr00034155 | |||||||
Construct_product | WBCnstr00001640 | ||||||
WBCnstr00034155 | |||||||
WBCnstr00038183 | |||||||
Microarray_results (20) | |||||||
Expression_cluster (117) | |||||||
Interaction | WBInteraction000502940 | ||||||
WBInteraction000502941 | |||||||
WBInteraction000502942 | |||||||
WBInteraction000518962 | |||||||
WBProcess | WBbiopr:00000010 | ||||||
Map_info | Map | V | Position | -2.52065 | Error | 0.028521 | |
Well_ordered | |||||||
Positive | Inside_rearr | nDf32 | |||||
yDp1 | |||||||
nDf33 | |||||||
sDf26 | |||||||
rT1 | |||||||
Positive_clone | C04F5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Mapping_data | 2_point (27) | ||||||
Multi_point (41) | |||||||
Pos_neg_data | 845 | ||||||
2134 | |||||||
3076 | |||||||
3259 | |||||||
Reference (65) | |||||||
Method | Gene |