WormBase Tree Display for Gene: WBGene00006782
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WBGene00006782 | SMap | S_parent | Sequence | C04F5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | unc-46 | Paper_evidence | WBPaper00000031 | |||||
Sequence_name | C04F5.3 | ||||||||
Molecular_name | C04F5.3 | ||||||||
C04F5.3.1 | |||||||||
CE27791 | |||||||||
Other_name | CELE_C04F5.3 | Accession_evidence | NDB | BX284605 | |||||
Public_name | unc-46 | ||||||||
DB_info | Database | AceView | gene | 5F576 | |||||
WormQTL | gene | WBGene00006782 | |||||||
WormFlux | gene | WBGene00006782 | |||||||
NDB | locus_tag | CELE_C04F5.3 | |||||||
NCBI | gene | 178897 | |||||||
RefSeq | protein | NM_071964.5 | |||||||
TREEFAM | TREEFAM_ID | TF320931 | |||||||
TrEMBL | UniProtAcc | Q9GZD5 | |||||||
UniProt_GCRP | UniProtAcc | Q9GZD5 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:42 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 23 Mar 2005 14:05:09 | WBPerson2970 | Event | Acquires_merge | WBGene00015445 | ||||
Acquires_merge | WBGene00015445 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | unc | ||||||||
Reference_allele | WBVar00143011 | ||||||||
Allele (38) | |||||||||
Legacy_information | e177 : shrinker contracts both dorsally and ventrally when prodded slow good forward movement poor backing; slightly small. ES3 ME2. NA3 (e300 e642). | ||||||||
[C.elegansII] e177 : shrinker contracts both dorsally and ventrally when prodded, slow, good forward movement, poor backing; slightly small. ES3 ME2. OA2: e300, e642. [Brenner 1974; McIntire et al. 1993; MT] | |||||||||
Strain (163) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00088377 | ||||||||
00088378 | |||||||||
Ortholog (29) | |||||||||
Structured_description | Concise_description | unc-46 encodes a type I transmembrane protein that contains a single motif similar to the LAMP (lysosomal associated membrane glycoprotein) domain; UNC-46 and UNC-47, the C. elegans vesicular GABA transporter, are required in GABAergic neurons for loading GABA into synaptic vesicles and thus, for all GABA-mediated behaviors; a rescuing UNC-46::GFP fusion protein localizes to synaptic varicosities in the dorsal and ventral nerve cords; UNC-46 and UNC-47 are mutually required for sorting/localization to synaptic vesicles; when overexpressed, unc-47 can rescue unc-46 mutant animals. | Paper_evidence | WBPaper00030788 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 12 Jun 2008 00:00:00 | ||||||||
Automated_description | Located in cytoplasmic vesicle and neuromuscular junction. Expressed in GLR and neurons. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C04F5.3 | |||||||
Corresponding_transcript | C04F5.3.1 | ||||||||
Other_sequence | Acan_isotig12346 | ||||||||
Associated_feature | WBsf652609 | ||||||||
WBsf999935 | |||||||||
WBsf233650 | |||||||||
Experimental_info | RNAi_result | WBRNAi00090126 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039641 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00028449 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089966 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010134 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089726 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090284 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr4785 | ||||||||
Expr4786 | |||||||||
Expr13159 | |||||||||
Expr15441 | |||||||||
Expr1021811 | |||||||||
Expr1143737 | |||||||||
Expr2017879 | |||||||||
Expr2036015 | |||||||||
Drives_construct | WBCnstr00001640 | ||||||||
WBCnstr00008362 | |||||||||
WBCnstr00008363 | |||||||||
WBCnstr00012243 | |||||||||
WBCnstr00020699 | |||||||||
WBCnstr00034155 | |||||||||
Construct_product | WBCnstr00001640 | ||||||||
WBCnstr00034155 | |||||||||
WBCnstr00038183 | |||||||||
Microarray_results (20) | |||||||||
Expression_cluster (117) | |||||||||
Interaction | WBInteraction000502940 | ||||||||
WBInteraction000502941 | |||||||||
WBInteraction000502942 | |||||||||
WBInteraction000518962 | |||||||||
WBProcess | WBbiopr:00000010 | ||||||||
Map_info | Map | V | Position | -2.52065 | Error | 0.028521 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | nDf32 | |||||||
yDp1 | |||||||||
nDf33 | |||||||||
sDf26 | |||||||||
rT1 | |||||||||
Positive_clone | C04F5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | 2_point (27) | ||||||||
Multi_point (41) | |||||||||
Pos_neg_data | 845 | ||||||||
2134 | |||||||||
3076 | |||||||||
3259 | |||||||||
Reference (65) | |||||||||
Method | Gene |