WormBase Tree Display for Gene: WBGene00006725
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| WBGene00006725 | SMap | S_parent | Sequence | H06I04 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rps-27A | Person_evidence | WBPerson555 | |||||
| Sequence_name | H06I04.4 | ||||||||
| Molecular_name | H06I04.4a | ||||||||
| H06I04.4a.1 | |||||||||
| CE20938 | |||||||||
| H06I04.4b | |||||||||
| CE31022 | |||||||||
| H06I04.4a.2 | |||||||||
| H06I04.4b.1 | |||||||||
| Other_name | ubl-1 | Person_evidence | WBPerson555 | ||||||
| eS31 | Person_evidence | WBPerson555 | |||||||
| CELE_H06I04.4 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | rps-27A | ||||||||
| DB_info | Database | AceView | gene | 3E159 | |||||
| WormQTL | gene | WBGene00006725 | |||||||
| WormFlux | gene | WBGene00006725 | |||||||
| NDB | locus_tag | CELE_H06I04.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006725|UniProtKB=P37165 | |||||||
| family | PTHR10666 | ||||||||
| NCBI | gene | 175413 | |||||||
| RefSeq | protein | NM_171089.8 | |||||||
| NM_001027466.5 | |||||||||
| SwissProt | UniProtAcc | P37165 | |||||||
| TREEFAM | TREEFAM_ID | TF300036 | |||||||
| UniProt_GCRP | UniProtAcc | P37165 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 17 May 2024 14:24:05 | WBPerson51134 | Name_change | CGC_name | rps-27A | ||||
| Other_name | ubl-1 | ||||||||
| 3 | 17 May 2024 14:24:05 | WBPerson51134 | Name_change | Other_name | eS31 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (17) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP3088 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00003587 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00005445 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00006727 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006728 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018661 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00014845 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00018660 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018659 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | ubl-1 encodes a protein similar to Drosophila ubiquitin/ ribosomal protein S27a that affects body length, fertility, and larval viability. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 30 Jul 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein tag activity and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Is an ortholog of human RPS27A (ribosomal protein S27a) and RPS27AP5 (ribosomal protein S27a pseudogene 5). | Paper_evidence | WBPaper00065943 | ||||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H06I04.4a | |||||||
| H06I04.4b | |||||||||
| Corresponding_transcript | H06I04.4a.1 | ||||||||
| H06I04.4a.2 | |||||||||
| H06I04.4b.1 | |||||||||
| Other_sequence (211) | |||||||||
| Associated_feature | WBsf645007 | ||||||||
| WBsf981422 | |||||||||
| WBsf991662 | |||||||||
| WBsf991663 | |||||||||
| WBsf1014506 | |||||||||
| WBsf224571 | |||||||||
| WBsf224572 | |||||||||
| WBsf224573 | |||||||||
| Experimental_info | RNAi_result (28) | ||||||||
| Expr_pattern | Expr1013561 | ||||||||
| Expr1032802 | |||||||||
| Expr1153065 | |||||||||
| Expr2017722 | |||||||||
| Expr2035860 | |||||||||
| Drives_construct | WBCnstr00019233 | ||||||||
| WBCnstr00019319 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (176) | |||||||||
| Interaction (192) | |||||||||
| Map_info | Map | III | Position | -7.91528 | Error | 0.030926 | |||
| Positive | Positive_clone | H06I04 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00035228 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042599 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061750 | |||||||||
| WBPaper00066492 | |||||||||
| Remark | Sequence connection from [Jones D, Candido EPM], 02/06/10 krb. | ||||||||
| This transcript encodes both ubiquitin-like and ribosomal protein S27a, which is cleaved off post-translationally [Hodgkin, JA]. | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Approved Human ortholog symbol: RPS27A | Person_evidence | WBPerson555 | |||||||
| New system for naming ribosomal proteins name: eS31 | Paper_evidence | WBPaper00066708 | |||||||
| Standard Protein name: RPS-27A | Person_evidence | WBPerson555 | |||||||
| Method | Gene |
