WormBase Tree Display for Gene: WBGene00004974
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WBGene00004974 | SMap | S_parent | Sequence | F25H8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | spe-29 | Person_evidence | WBPerson252 | |||||
Sequence_name | F25H8.7 | ||||||||
Molecular_name | F25H8.7 | ||||||||
F25H8.7.1 | |||||||||
CE26700 | |||||||||
Other_name | CELE_F25H8.7 | Accession_evidence | NDB | BX284604 | |||||
Public_name | spe-29 | ||||||||
DB_info | Database | AceView | gene | 4K699 | |||||
WormQTL | gene | WBGene00004974 | |||||||
WormFlux | gene | WBGene00004974 | |||||||
NDB | locus_tag | CELE_F25H8.7 | |||||||
NCBI | gene | 177849 | |||||||
RefSeq | protein | NM_069390.5 | |||||||
TrEMBL | UniProtAcc | G5ED71 | |||||||
UniProt_GCRP | UniProtAcc | G5ED71 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | spe | ||||||||
Allele | WBVar00088041 | Inferred_automatically | From strain object: BA1044 | ||||||
From strain object: BA1051 | |||||||||
From strain object: BA959 | |||||||||
From strain object: BA962 | |||||||||
From strain object: BA968 | |||||||||
From strain object: BA975 | |||||||||
WBVar01500079 | |||||||||
WBVar00934852 | |||||||||
WBVar01498996 | |||||||||
WBVar01499925 | |||||||||
WBVar01856453 | |||||||||
WBVar01500245 | |||||||||
WBVar01730517 | |||||||||
Legacy_information | [S. L'Hernault ] spe-29 mutants are similar to spe-8, spe-12 and spe-27 mutants in that hermaphrodites are self-sterile and males are cross fertile. It is presently defined by one leaky allele, spe-29(it127). Self brood size at 16 and 25 degrees are 1-2 and 4-10 at 20 degrees. spe-29/eDf19 is still slightly self-fertile | ||||||||
[Nance JF] virgin herms. are self-sterile, lay many oocytes, almost no eggs. Males fertile. Mated herms. make self and outcrossed progeny | |||||||||
[C.elegansII] it127 : leaky, hermaphrodites produce nonfunctional sperm, almost self-sterile (brood 4 - 10 at 20C, 1 - 2 at16C or 25C); males are fertile. it127/Df similar. NA1. [BA] | |||||||||
Complementation_data | [Nance JF] complements spe-27(it110), spe-27(it132ts), gon-1(e1254), gon-4(e2575) | ||||||||
Strain | WBStrain00000422 | ||||||||
WBStrain00000423 | |||||||||
WBStrain00000409 | |||||||||
WBStrain00000410 | |||||||||
WBStrain00000413 | |||||||||
WBStrain00000417 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00012732 | ||||||||
00012733 | |||||||||
Ortholog | WBGene00086067 | Caenorhabditis remanei | From_analysis | OMA | |||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00271164 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
CSP26.g19337 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP29.g23818 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP32.g8318 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP39.g3611 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g13045 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
FL83_13733 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
Sp34_40253800 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrIV_pilon.g11454 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | spe-29 is predicted to encode a small and novel transmembrane protein that is required for hermaphrodite spermiogensis or sperm activation but not for male-derived sperm activation (sperm activation is the morphogenesis of a round non-motile spermatid to an amoeboid crawling sperm); however, mutant hermaphrodite spe-29 spermatids can transactivate and form functional sperm during mating with males; genetic and phenotypic evidence suggests that spe-29 acts in a common pathway with spe-8, spe-12, spe-19 and spe-27. | Paper_evidence | WBPaper00004444 | |||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 26 Jul 2010 00:00:00 | ||||||||
Automated_description | Involved in spermatid development. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F25H8.7 | |||||||
Corresponding_transcript | F25H8.7.1 | ||||||||
Associated_feature | WBsf646268 | ||||||||
WBsf228904 | |||||||||
Experimental_info | RNAi_result | WBRNAi00045559 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1023959 | ||||||||
Expr1032474 | |||||||||
Expr1149474 | |||||||||
Expr2016038 | |||||||||
Expr2034272 | |||||||||
Drives_construct | WBCnstr00035297 | ||||||||
Construct_product | WBCnstr00035297 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (81) | |||||||||
Interaction (34) | |||||||||
WBProcess | WBbiopr:00000069 | ||||||||
Map_info | Map | IV | Position | 4.45304 | Error | 0.000725 | |||
Well_ordered | |||||||||
Positive | Positive_clone | F25H8 | Person_evidence | WBPerson440 | |||||
Author_evidence | Jeremy Nance | ||||||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Mapping_data | Multi_point (14) | ||||||||
Pos_neg_data | 8923 | ||||||||
8924 | |||||||||
8925 | |||||||||
8985 | |||||||||
8986 | |||||||||
Reference (23) | |||||||||
Remark | [Nance JF]it127 is a slightly leaky allele; hermaphrodites lay between 0 and 14 eggs among many oocytes at 20C. It is possible to grow up a population of spe-29(it127) hermaphrodites in the absence of males | ||||||||
Method | Gene |