WormBase Tree Display for Gene: WBGene00004952
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WBGene00004952 | SMap | S_parent | Sequence | Y34D9A | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | spd-1 | Person_evidence | WBPerson689 | |||
Sequence_name | Y34D9A.4 | ||||||
Molecular_name | Y34D9A.4 | ||||||
Y34D9A.4.1 | |||||||
CE37061 | |||||||
Other_name | Y34D9A.d | Curator_confirmed | WBPerson1983 | ||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
Y34D9A.e | Curator_confirmed | WBPerson1983 | |||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
Y34D9A.h | Curator_confirmed | WBPerson1983 | |||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
Y34D9A.i | Curator_confirmed | WBPerson1983 | |||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
CELE_Y34D9A.4 | Accession_evidence | NDB | BX284601 | ||||
Public_name | spd-1 | ||||||
DB_info | Database | AceView | gene | 1B504 | |||
WormQTL | gene | WBGene00004952 | |||||
WormFlux | gene | WBGene00004952 | |||||
NDB | locus_tag | CELE_Y34D9A.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00004952|UniProtKB=G5ED58 | |||||
family | PTHR19321 | ||||||
NCBI | gene | 171683 | |||||
RefSeq | protein | NM_058408.7 | |||||
TREEFAM | TREEFAM_ID | TF323976 | |||||
TrEMBL | UniProtAcc | G5ED58 | |||||
UniProt_GCRP | UniProtAcc | G5ED58 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Acquires_merge | WBGene00021330 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | spd | ||||||
Allele (81) | |||||||
Legacy_information | [O'Connell KF] Spindle defective, temperature-sensitive sterile, uncoordinated | ||||||
Complementation_data | [O'Connell KF] mex-3(zu155) | ||||||
Strain | WBStrain00040350 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (22) | |||||||
Ortholog (32) | |||||||
Structured_description | Concise_description | spd-1 encodes a homolog of human PRC1, tobacco MAP-65, and S. cerevisiae Ase1p that is required for embryonic viability due to its requirement for mitotic spindle stability during the late stages of cytokinesis; SPD-1 is also required for fertility, gonad development, locomotion, and vulval development. | Paper_evidence | WBPaper00003120 | |||
WBPaper00012305 | |||||||
Curator_confirmed | WBPerson567 | ||||||
WBPerson48 | |||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables microtubule binding activity. Involved in several processes, including ciliary body morphogenesis; gonad development; and microtubule bundle formation involved in mitotic spindle midzone assembly. Located in microtubule; mitotic spindle midzone; and nucleus. Is an ortholog of human PRC1 (protein regulator of cytokinesis 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y34D9A.4 | |||||
Corresponding_CDS_history | Y34D9A.4:wp126 | ||||||
Corresponding_transcript | Y34D9A.4.1 | ||||||
Other_sequence | CR06467 | ||||||
CGC01239_1 | |||||||
CRC03209_1 | |||||||
CR06130 | |||||||
CRC00615_1 | |||||||
CBC06285_1 | |||||||
CR00665 | |||||||
Associated_feature | WBsf648927 | ||||||
WBsf663897 | |||||||
WBsf663898 | |||||||
WBsf982648 | |||||||
WBsf1009178 | |||||||
WBsf218952 | |||||||
WBsf218953 | |||||||
Experimental_info | RNAi_result (29) | ||||||
Expr_pattern | Expr3111 | ||||||
Expr13888 | |||||||
Expr1019167 | |||||||
Expr1032466 | |||||||
Expr1159359 | |||||||
Expr2016024 | |||||||
Expr2034259 | |||||||
Drives_construct | WBCnstr00020440 | ||||||
Construct_product | WBCnstr00001386 | ||||||
WBCnstr00020424 | |||||||
WBCnstr00020440 | |||||||
Antibody | WBAntibody00000779 | ||||||
WBAntibody00002645 | |||||||
WBAntibody00002784 | |||||||
Microarray_results (27) | |||||||
Expression_cluster (124) | |||||||
Interaction (34) | |||||||
Map_info | Map | I | Position | -17.3859 | Error | 0.032529 | |
Positive | Inside_rearr | hDf10 | |||||
Positive_clone | Y34D9A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Mapping_data | Multi_point | 3659 | |||||
3660 | |||||||
Pos_neg_data | 9376 | ||||||
Reference (38) | |||||||
Method | Gene |