WormBase Tree Display for Gene: WBGene00004952
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| WBGene00004952 | SMap | S_parent | Sequence | Y34D9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | spd-1 | Person_evidence | WBPerson689 | |||||
| Sequence_name | Y34D9A.4 | ||||||||
| Molecular_name | Y34D9A.4 | ||||||||
| Y34D9A.4.1 | |||||||||
| CE37061 | |||||||||
| Other_name | Y34D9A.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y34D9A.e | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y34D9A.h | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y34D9A.i | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y34D9A.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | spd-1 | ||||||||
| DB_info | Database | AceView | gene | 1B504 | |||||
| WormQTL | gene | WBGene00004952 | |||||||
| WormFlux | gene | WBGene00004952 | |||||||
| NDB | locus_tag | CELE_Y34D9A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004952|UniProtKB=G5ED58 | |||||||
| family | PTHR19321 | ||||||||
| NCBI | gene | 171683 | |||||||
| RefSeq | protein | NM_058408.7 | |||||||
| TREEFAM | TREEFAM_ID | TF323976 | |||||||
| TrEMBL | UniProtAcc | G5ED58 | |||||||
| UniProt_GCRP | UniProtAcc | G5ED58 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 02 Dec 2004 16:55:02 | WBPerson2970 | Event | Acquires_merge | WBGene00021330 | ||||
| Acquires_merge | WBGene00021330 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spd | ||||||||
| Allele (81) | |||||||||
| Legacy_information | [O'Connell KF] Spindle defective, temperature-sensitive sterile, uncoordinated | ||||||||
| Complementation_data | [O'Connell KF] mex-3(zu155) | ||||||||
| Strain | WBStrain00040350 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (32) | |||||||||
| Structured_description | Concise_description | spd-1 encodes a homolog of human PRC1, tobacco MAP-65, and S. cerevisiae Ase1p that is required for embryonic viability due to its requirement for mitotic spindle stability during the late stages of cytokinesis; SPD-1 is also required for fertility, gonad development, locomotion, and vulval development. | Paper_evidence | WBPaper00003120 | |||||
| WBPaper00012305 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| WBPerson48 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables microtubule binding activity. Involved in several processes, including ciliary body morphogenesis; gonad development; and microtubule bundle formation involved in mitotic spindle midzone assembly. Located in microtubule; mitotic spindle midzone; and nucleus. Is an ortholog of human PRC1 (protein regulator of cytokinesis 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y34D9A.4 | |||||||
| Corresponding_CDS_history | Y34D9A.4:wp126 | ||||||||
| Corresponding_transcript | Y34D9A.4.1 | ||||||||
| Other_sequence | CR06467 | ||||||||
| CGC01239_1 | |||||||||
| CRC03209_1 | |||||||||
| CR06130 | |||||||||
| CRC00615_1 | |||||||||
| CBC06285_1 | |||||||||
| CR00665 | |||||||||
| Associated_feature | WBsf648927 | ||||||||
| WBsf663897 | |||||||||
| WBsf663898 | |||||||||
| WBsf982648 | |||||||||
| WBsf1009178 | |||||||||
| WBsf218952 | |||||||||
| WBsf218953 | |||||||||
| Experimental_info | RNAi_result (29) | ||||||||
| Expr_pattern | Expr3111 | ||||||||
| Expr13888 | |||||||||
| Expr1019167 | |||||||||
| Expr1032466 | |||||||||
| Expr1159359 | |||||||||
| Expr2016024 | |||||||||
| Expr2034259 | |||||||||
| Drives_construct | WBCnstr00020440 | ||||||||
| Construct_product | WBCnstr00001386 | ||||||||
| WBCnstr00020424 | |||||||||
| WBCnstr00020440 | |||||||||
| Antibody | WBAntibody00000779 | ||||||||
| WBAntibody00002645 | |||||||||
| WBAntibody00002784 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (124) | |||||||||
| Interaction (34) | |||||||||
| Map_info | Map | I | Position | -17.3859 | Error | 0.032529 | |||
| Positive | Inside_rearr | hDf10 | |||||||
| Positive_clone | Y34D9A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | Multi_point (2) | ||||||||
| Pos_neg_data | 9376 | ||||||||
| Reference (38) | |||||||||
| Method | Gene |
