WormBase Tree Display for Gene: WBGene00004899
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WBGene00004899 | SMap | S_parent | Sequence | C30A5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | snb-5 | |||||||
Sequence_name | C30A5.5 | ||||||||
Molecular_name | C30A5.5 | ||||||||
C30A5.5.1 | |||||||||
CE00096 | |||||||||
Other_name | CELE_C30A5.5 | Accession_evidence | NDB | BX284603 | |||||
Public_name | snb-5 | ||||||||
DB_info | Database | AceView | gene | 3J295 | |||||
WormQTL | gene | WBGene00004899 | |||||||
WormFlux | gene | WBGene00004899 | |||||||
NDB | locus_tag | CELE_C30A5.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004899|UniProtKB=P34351 | |||||||
family | PTHR45701 | ||||||||
NCBI | gene | 191767 | |||||||
RefSeq | protein | NM_066389.3 | |||||||
SwissProt | UniProtAcc | P34351 | |||||||
UniProt_GCRP | UniProtAcc | P34351 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | snb | ||||||||
Allele (16) | |||||||||
Strain | WBStrain00036148 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (7) | |||||||||
Ortholog (25) | |||||||||
Paralog | WBGene00014084 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
WormBase-Compara | |||||||||
WBGene00044062 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00004897 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004898 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00007200 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00015164 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00018853 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022077 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | snb-5 encodes a predicted synaptobrevin. | Curator_confirmed | WBPerson48 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in vesicle fusion. Predicted to be located in plasma membrane. Predicted to be part of SNARE complex. Is an ortholog of human VAMP7 (vesicle associated membrane protein 7). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C30A5.5 | |||||||
Corresponding_transcript | C30A5.5.1 | ||||||||
Associated_feature | WBsf1015369 | ||||||||
WBsf225369 | |||||||||
Experimental_info | RNAi_result | WBRNAi00011374 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006927 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007112 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041520 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00029344 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041521 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1019042 | ||||||||
Expr1145543 | |||||||||
Expr2015941 | |||||||||
Expr2034174 | |||||||||
Drives_construct | WBCnstr00035335 | ||||||||
Construct_product | WBCnstr00035335 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (62) | |||||||||
Interaction | WBInteraction000262780 | ||||||||
WBInteraction000293331 | |||||||||
WBInteraction000320422 | |||||||||
WBInteraction000420370 | |||||||||
WBInteraction000443696 | |||||||||
WBInteraction000444429 | |||||||||
WBInteraction000461826 | |||||||||
Map_info | Map | III | Position | -0.368385 | Error | 0.002112 | |||
Positive | Positive_clone | C30A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5150 | |||||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |