WormBase Tree Display for Gene: WBGene00004489

WBGene00004489 SMap: S_parent: Sequence: Y105E8A
  Identity: Version: 2
    Name: CGC_name: rps-20
      Sequence_name: Y105E8A.16
      Molecular_name: Y105E8A.16
        Y105E8A.16.1
        CE29835
      Other_name: Y105E8E.s Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        uS10 Person_evidence: WBPerson555
        CELE_Y105E8A.16 Accession_evidence: NDB BX284601
      Public_name: rps-20
    DB_info: Database: AceView gene 1P60
        WormQTL gene WBGene00004489
        WormFlux gene WBGene00004489
        NDB locus_tag CELE_Y105E8A.16
        Panther gene CAEEL|WormBase=WBGene00004489|UniProtKB=Q8WQA8
          family PTHR11700
        NCBI gene 173309
        RefSeq protein NM_170948.8
        TREEFAM TREEFAM_ID TF300222
        TrEMBL UniProtAcc Q8WQA8
        UniProt_GCRP UniProtAcc Q8WQA8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 17 May 2024 14:24:05 WBPerson51134 Name_change: Other_name: uS10
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (17)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps20 using blastP
    Strain: WBStrain00055661
      WBStrain00055660
    RNASeq_FPKM (74)
    GO_annotation (11)
    Contained_in_operon: CEOP1732
    Ortholog (40)
    Structured_description: Concise_description: rps-20 encodes a small ribosomal subunit S20 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS20 (ribosomal protein S20). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: Y105E8A.16
    Corresponding_transcript: Y105E8A.16.1
    Other_sequence (240)
    Associated_feature: WBsf649762
      WBsf649763
      WBsf663841
      WBsf665124
      WBsf981142
      WBsf220614
      WBsf220615
      WBsf220616
  Experimental_info: RNAi_result (33)
    Expr_pattern: Expr1010400
      Expr1032292
      Expr1158753
      Expr2015515
      Expr2033750
    Microarray_results (31)
    Expression_cluster (168)
    Interaction (200)
  Map_info (3)
  Reference: WBPaper00035228
    WBPaper00038491
    WBPaper00055090
    WBPaper00064339
    WBPaper00065181
  Remark: rps-20 is described as "Orthologous to yeast (S.cerevisiae) ribosomal protein rps20 using blastP". BlastP of C. elegans with sp|P38701|RS20_YEAST gives the hit Y105E8A.16 Person_evidence: WBPerson567
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    Approved Human ortholog symbol: RPS20 Person_evidence: WBPerson555
    New system for naming ribosomal proteins name: uS10 Paper_evidence: WBPaper00066708
    Standard Protein name: RPS-20 Person_evidence: WBPerson555
  Method: Gene