WormBase Tree Display for Gene: WBGene00004479
expand all nodes | collapse all nodes | view schema
| WBGene00004479 | SMap | S_parent | Sequence | D1007 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rps-10 | |||||||
| Sequence_name | D1007.6 | ||||||||
| Molecular_name | D1007.6 | ||||||||
| D1007.6.1 | |||||||||
| CE09041 | |||||||||
| Other_name | eS10 | Person_evidence | WBPerson555 | ||||||
| CELE_D1007.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | rps-10 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 17 May 2024 14:24:05 | WBPerson51134 | Name_change | Other_name | eS10 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele | WBVar02160357 | Inferred_automatically | From strain object: PD2557 | ||||||
| WBVar01498959 | |||||||||
| WBVar01475411 | |||||||||
| WBVar01499919 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01499985 | |||||||||
| WBVar00633089 | |||||||||
| WBVar00633090 | |||||||||
| WBVar00633091 | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps10 using blastP | ||||||||
| Strain | WBStrain00055660 | ||||||||
| WBStrain00055659 | |||||||||
| WBStrain00063003 | |||||||||
| WBStrain00062917 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027055 | ||||||||
| 00027056 | |||||||||
| 00027057 | |||||||||
| 00027058 | |||||||||
| 00027059 | |||||||||
| 00027060 | |||||||||
| 00027061 | |||||||||
| 00027062 | |||||||||
| 00027063 | |||||||||
| Contained_in_operon | CEOP1184 | ||||||||
| Ortholog (44) | |||||||||
| Structured_description | Concise_description | rps-10 encodes a small (40S) ribosomal subunit S10 protein; loss of rps-10 activity in adult animals extends lifespan. | Paper_evidence | WBPaper00029008 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 25 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 9. Is an ortholog of human RPS10 (ribosomal protein S10) and RPS10P5 (ribosomal protein S10 pseudogene 5). | Paper_evidence | WBPaper00065943 | ||||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111884 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10383) | ||||
| Molecular_info | Corresponding_CDS | D1007.6 | |||||||
| Corresponding_transcript | D1007.6.1 | ||||||||
| Other_sequence (201) | |||||||||
| Associated_feature | WBsf649105 | ||||||||
| WBsf649106 | |||||||||
| WBsf664155 | |||||||||
| WBsf981003 | |||||||||
| WBsf983445 | |||||||||
| WBsf1009684 | |||||||||
| WBsf219286 | |||||||||
| WBsf219287 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1028804 | ||||||||
| Expr1032282 | |||||||||
| Expr1147311 | |||||||||
| Expr2015504 | |||||||||
| Expr2033739 | |||||||||
| Drives_construct | WBCnstr00035454 | ||||||||
| Construct_product | WBCnstr00035454 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (163) | |||||||||
| Interaction (224) | |||||||||
| Map_info | Map | I | Position | -1.04182 | |||||
| Positive | Positive_clone | D1007 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028451 | ||||||||
| WBPaper00029008 | |||||||||
| WBPaper00035215 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00066405 | |||||||||
| WBPaper00067708 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Approved Human ortholog symbol: RPS10 | Person_evidence | WBPerson555 | |||||||
| New system for naming ribosomal proteins name: eS10 | Paper_evidence | WBPaper00066708 | |||||||
| Standard Protein name: RPS-10 | Person_evidence | WBPerson555 | |||||||
| Method | Gene |
