WormBase Tree Display for Gene: WBGene00004161
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WBGene00004161 | SMap | S_parent | Sequence | Y111B2A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pqn-80 | Person_evidence | WBPerson625 | |||||
Sequence_name | Y111B2A.14 | ||||||||
Molecular_name (59) | |||||||||
Other_name | Y111B2G.d | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y111B2G.e | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y111B2A.14 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | pqn-80 | ||||||||
DB_info | Database | AceView | gene | 3N739 | |||||
WormQTL | gene | WBGene00004161 | |||||||
WormFlux | gene | WBGene00004161 | |||||||
NDB | locus_tag | CELE_Y111B2A.14 | |||||||
Panther | gene | CAEEL|WormBase=Y111B2A.14c|UniProtKB=A0A0K3AX73 | |||||||
family | PTHR23189 | ||||||||
NCBI | gene | 176683 | |||||||
RefSeq | protein (19) | ||||||||
TREEFAM | TREEFAM_ID | TF343498 | |||||||
TrEMBL | UniProtAcc (19) | ||||||||
UniProt_GCRP | UniProtAcc | A0A0K3AX73 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pqn | ||||||||
Allele (658) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP3766 | ||||||||
Ortholog (17) | |||||||||
Paralog | WBGene00001081 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WBGene00003822 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
WBPaper00012788 | |||||||||
WBPaper00012830 | |||||||||
WBPaper00012882 | |||||||||
WBPaper00012897 | |||||||||
WBPaper00013003 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in ABalppppppa; ABpraaapppa; and body wall muscle cell based on tiling array and single-cell RNA-seq studies. Is affected by several genes including cyc-1; etr-1; and mrps-5 based on microarray; RNA-seq; and proteomic studies. Is affected by eleven chemicals including rotenone; D-glucose; and metformin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: HPC2 and ubinuclein domain and Hpc2-related domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS (19) | ||||||||
Corresponding_CDS_history | Y111B2A.14:wp59 | ||||||||
Y111B2A.14:wp200 | |||||||||
Y111B2A.14:wp206 | |||||||||
Corresponding_transcript (21) | |||||||||
Other_sequence (17) | |||||||||
Associated_feature (20) | |||||||||
Experimental_info | RNAi_result | WBRNAi00055343 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00085523 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064389 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036570 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026588 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00055342 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00055344 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007291 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009284 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1019536 | ||||||||
Expr1032028 | |||||||||
Expr1158876 | |||||||||
Expr2015073 | |||||||||
Expr2033309 | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (62) | |||||||||
SAGE_tag (23) | |||||||||
Interaction | WBInteraction000502475 | ||||||||
WBInteraction000575247 | |||||||||
Map_info | Map | III | Position | 18.0442 | Error | 0.017944 | |||
Positive | Positive_clone | Y111B2A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00037357 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00057644 | |||||||||
WBPaper00059739 | |||||||||
WBPaper00065394 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |