WormBase Tree Display for Gene: WBGene00003933
expand all nodes | collapse all nodes | view schema
WBGene00003933 | SMap | S_parent | Sequence | T27B1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | pat-9 | Paper_evidence | WBPaper00041122 | |||
Person_evidence | WBPerson1562 | ||||||
Sequence_name | T27B1.2 | ||||||
Molecular_name (12) | |||||||
Other_name | ztf-19 | Person_evidence | WBPerson1997 | ||||
CELE_T27B1.2 | Accession_evidence | NDB | BX284606 | ||||
Public_name | pat-9 | ||||||
DB_info | Database | WormFlux | gene | WBGene00003933 | |||
NDB | locus_tag | CELE_T27B1.2 | |||||
Panther | gene | CAEEL|WormBase=WBGene00003933|UniProtKB=Q22829 | |||||
family | PTHR24381 | ||||||
NCBI | gene | 181714 | |||||
RefSeq | protein | NM_001395795.1 | |||||
NM_078279.7 | |||||||
NM_001395796.1 | |||||||
NM_001395794.1 | |||||||
SwissProt | UniProtAcc | Q22829 | |||||
TrEMBL | UniProtAcc | A0A8D9MJX7 | |||||
A0A8D9I7Y6 | |||||||
A0A8D9MHV7 | |||||||
UniProt_GCRP | UniProtAcc | Q22829 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Acquires_merge | WBGene00020848 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pat | ||||||
Allele (51) | |||||||
Legacy_information | [Williams BD] Severe Pat phenotype; some pharyngeal pumping. | ||||||
[C.elegansII] st558 : severe Pat phenotype; some pharyngeal pumping. [Williams and Waterston 1994; RW] | |||||||
Strain | WBStrain00033501 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00072740 | ||||||
00072741 | |||||||
00072742 | |||||||
00072743 | |||||||
00072744 | |||||||
00072745 | |||||||
00072746 | |||||||
00072747 | |||||||
00072748 | |||||||
00072749 | |||||||
Ortholog (26) | |||||||
Structured_description | Automated_description | Predicted to enable chromatin insulator sequence binding activity. Involved in regulation of striated muscle cell differentiation. Located in nucleus. Expressed in body wall musculature and gonad. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T27B1.2a | |||||
T27B1.2b | |||||||
T27B1.2c | |||||||
T27B1.2d | |||||||
Corresponding_transcript | T27B1.2a.1 | ||||||
T27B1.2b.1 | |||||||
T27B1.2c.1 | |||||||
T27B1.2d.1 | |||||||
Other_sequence | JI461044.1 | ||||||
JI170232.1 | |||||||
BUC01144_1 | |||||||
JI478385.1 | |||||||
XI04992 | |||||||
JI482849.1 | |||||||
PPC02773_1 | |||||||
Associated_feature (26) | |||||||
Transcription_factor | WBTranscriptionFactor001153 | ||||||
Experimental_info | RNAi_result | WBRNAi00107525 | Inferred_automatically | RNAi_primary | |||
WBRNAi00026413 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00081188 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00081192 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054272 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00111581 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107234 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00009226 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00111582 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107150 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr10031 | ||||||
Expr1031866 | |||||||
Expr1157821 | |||||||
Expr2014754 | |||||||
Expr2032988 | |||||||
Drives_construct | WBCnstr00015012 | ||||||
WBCnstr00035787 | |||||||
Construct_product | WBCnstr00015012 | ||||||
WBCnstr00035787 | |||||||
Antibody | WBAntibody00002324 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (205) | |||||||
Interaction (42) | |||||||
WBProcess | WBbiopr:00000006 | ||||||
Map_info | Map | X | Position | 24.0236 | |||
Positive | Positive_clone | T27B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Pos_neg_data | 8155 | |||||
8156 | |||||||
Reference | WBPaper00001894 | ||||||
WBPaper00012327 | |||||||
WBPaper00026533 | |||||||
WBPaper00027228 | |||||||
WBPaper00034662 | |||||||
WBPaper00036199 | |||||||
WBPaper00041122 | |||||||
WBPaper00055090 | |||||||
Remark | Data extracted from Williams & Waterston 1994 | ||||||
Method | Gene |