WormBase Tree Display for Gene: WBGene00003933
expand all nodes | collapse all nodes | view schema
WBGene00003933 | SMap | S_parent | Sequence | T27B1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pat-9 | Paper_evidence | WBPaper00041122 | |||||
Person_evidence | WBPerson1562 | ||||||||
Sequence_name | T27B1.2 | ||||||||
Molecular_name (12) | |||||||||
Other_name | ztf-19 | Person_evidence | WBPerson1997 | ||||||
CELE_T27B1.2 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | pat-9 | ||||||||
DB_info | Database | WormFlux | gene | WBGene00003933 | |||||
NDB | locus_tag | CELE_T27B1.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003933|UniProtKB=Q22829 | |||||||
family | PTHR24381 | ||||||||
NCBI | gene | 181714 | |||||||
RefSeq | protein | NM_001395795.1 | |||||||
NM_078279.7 | |||||||||
NM_001395796.1 | |||||||||
NM_001395794.1 | |||||||||
SwissProt | UniProtAcc | Q22829 | |||||||
TrEMBL | UniProtAcc | A0A8D9MJX7 | |||||||
A0A8D9I7Y6 | |||||||||
A0A8D9MHV7 | |||||||||
UniProt_GCRP | UniProtAcc | Q22829 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 25 May 2012 15:26:41 | WBPerson2970 | Event | Acquires_merge | WBGene00020848 | ||||
Name_change | Sequence_name | T27B1.2 | |||||||
Other_name | ztf-19 | ||||||||
Acquires_merge | WBGene00020848 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pat | ||||||||
Allele (51) | |||||||||
Legacy_information | [Williams BD] Severe Pat phenotype; some pharyngeal pumping. | ||||||||
[C.elegansII] st558 : severe Pat phenotype; some pharyngeal pumping. [Williams and Waterston 1994; RW] | |||||||||
Strain | WBStrain00033501 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00072740 | ||||||||
00072741 | |||||||||
00072742 | |||||||||
00072743 | |||||||||
00072744 | |||||||||
00072745 | |||||||||
00072746 | |||||||||
00072747 | |||||||||
00072748 | |||||||||
00072749 | |||||||||
Ortholog (26) | |||||||||
Structured_description | Automated_description | Predicted to enable chromatin insulator sequence binding activity. Involved in regulation of striated muscle cell differentiation. Located in nucleus. Expressed in body wall musculature and gonad. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T27B1.2a | |||||||
T27B1.2b | |||||||||
T27B1.2c | |||||||||
T27B1.2d | |||||||||
Corresponding_transcript | T27B1.2a.1 | ||||||||
T27B1.2b.1 | |||||||||
T27B1.2c.1 | |||||||||
T27B1.2d.1 | |||||||||
Other_sequence | JI461044.1 | ||||||||
JI170232.1 | |||||||||
BUC01144_1 | |||||||||
JI478385.1 | |||||||||
XI04992 | |||||||||
JI482849.1 | |||||||||
PPC02773_1 | |||||||||
Associated_feature (26) | |||||||||
Transcription_factor | WBTranscriptionFactor001153 | ||||||||
Experimental_info | RNAi_result | WBRNAi00107525 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00026413 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00081188 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00081192 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054272 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00111581 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107234 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009226 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00111582 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107150 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr10031 | ||||||||
Expr1031866 | |||||||||
Expr1157821 | |||||||||
Expr2014754 | |||||||||
Expr2032988 | |||||||||
Drives_construct | WBCnstr00015012 | ||||||||
WBCnstr00035787 | |||||||||
Construct_product | WBCnstr00015012 | ||||||||
WBCnstr00035787 | |||||||||
Antibody | WBAntibody00002324 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (205) | |||||||||
Interaction (42) | |||||||||
WBProcess | WBbiopr:00000006 | ||||||||
Map_info | Map | X | Position | 24.0236 | |||||
Positive | Positive_clone | T27B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Pos_neg_data | 8155 | |||||||
8156 | |||||||||
Reference | WBPaper00001894 | ||||||||
WBPaper00012327 | |||||||||
WBPaper00026533 | |||||||||
WBPaper00027228 | |||||||||
WBPaper00034662 | |||||||||
WBPaper00036199 | |||||||||
WBPaper00041122 | |||||||||
WBPaper00055090 | |||||||||
Remark | Data extracted from Williams & Waterston 1994 | ||||||||
Method | Gene |