WormBase Tree Display for Gene: WBGene00003889
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WBGene00003889 | SMap | S_parent | Sequence | B0212 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | osm-9 | Person_evidence | WBPerson242 | |||||
Sequence_name | B0212.5 | ||||||||
Molecular_name | B0212.5 | ||||||||
B0212.5.1 | |||||||||
CE20445 | |||||||||
Other_name | nss-2 | ||||||||
CELE_B0212.5 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | osm-9 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | osm | ||||||||
Allele (120) | |||||||||
Legacy_information | [C.elegansII] n1601 : defective in osmotic avoidance, also in nose touch avoidance (Not); Adp (partly defective adaptation to isoamyl alcohol and butanone); normal chemotaxis.OA5: n1516, n1603, n2473, ky10 (similar). [Colbert & Bargmann 1995; JT; KP; MT] | ||||||||
Strain | WBStrain00023453 | ||||||||
WBStrain00036458 | |||||||||
WBStrain00005214 | |||||||||
WBStrain00007483 | |||||||||
WBStrain00052609 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (29) | |||||||||
Ortholog (45) | |||||||||
Paralog | WBGene00003838 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003839 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003840 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | osm-9 encodes a TRPV channel homologous to capsaicin receptors; osm-9 is involved in sensory responses to a subset of chemical stimuli and to ASH neuron-mediated osmotic and mechanical stimuli; OSM-9 is also involved in adaptation to volatile odorants and salts; OSM-9 is expressed in a variety of sensory neurons and shows neuron-specific localization to either the cell body or the cilium. | Paper_evidence | WBPaper00002166 | |||||
WBPaper00002930 | |||||||||
WBPaper00005150 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 20 Apr 2011 00:00:00 | ||||||||
Automated_description | Enables calcium channel activity and temperature-gated cation channel activity. Involved in several processes, including negative adaptation of signaling pathway; nervous system process; and response to stress. Located in neuronal cell body; non-motile cilium; and perinuclear region of cytoplasm. Expressed in RIG; head mesodermal cell; rectal gland cell; sensory neurons; and uterine toroidal epithelial cell. Human ortholog(s) of this gene implicated in several diseases, including keratosis (multiple); motor neuron disease (multiple); and osteochondrodysplasia (multiple). Is an ortholog of human TRPV3 (transient receptor potential cation channel subfamily V member 3); TRPV4 (transient receptor potential cation channel subfamily V member 4); and TRPV5 (transient receptor potential cation channel subfamily V member 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model (17) | ||||||||
Molecular_info | Corresponding_CDS | B0212.5 | |||||||
Corresponding_transcript | B0212.5.1 | ||||||||
Other_sequence (14) | |||||||||
Associated_feature | WBsf667839 | ||||||||
WBsf995982 | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern (12) | |||||||||
Drives_construct | WBCnstr00000837 | ||||||||
WBCnstr00005979 | |||||||||
WBCnstr00008561 | |||||||||
WBCnstr00010985 | |||||||||
WBCnstr00010991 | |||||||||
WBCnstr00011000 | |||||||||
WBCnstr00011004 | |||||||||
WBCnstr00012945 | |||||||||
WBCnstr00023098 | |||||||||
WBCnstr00035811 | |||||||||
Construct_product | WBCnstr00000837 | ||||||||
WBCnstr00006801 | |||||||||
WBCnstr00010991 | |||||||||
WBCnstr00011000 | |||||||||
WBCnstr00011004 | |||||||||
WBCnstr00012945 | |||||||||
WBCnstr00020618 | |||||||||
WBCnstr00035811 | |||||||||
Regulate_expr_cluster | WBPaper00049594:osm-9(ok1677)_NaCl(200mM)_upregulate | ||||||||
WBPaper00049594:osm-9(ok1677)_upregulated | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (104) | |||||||||
Interaction (116) | |||||||||
Anatomy_function | WBbtf0291 | ||||||||
WBProcess | WBbiopr:00000002 | ||||||||
Map_info | Map | IV | Position | -3.15659 | Error | 0.016734 | |||
Well_ordered | |||||||||
Positive | Positive_clone | B0212 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
CX#2-12 | |||||||||
Mapping_data | 2_point | 3729 | |||||||
3730 | |||||||||
Multi_point | 1365 | ||||||||
1366 | |||||||||
Reference (228) | |||||||||
Remark | Possibly homologous to mammalian capsaicin receptor VR1. Some osm-9 mutants are sensitive to capsaicin.[bionet.celegans from Olsen] | Curator_confirmed | WBPerson1250 | ||||||
Method | Gene |