WormBase Tree Display for Gene: WBGene00003825
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| WBGene00003825 | Evidence | Person_evidence | WBPerson2661 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | B0286 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ntl-2 | |||||||
| Sequence_name | B0286.4 | ||||||||
| Molecular_name (20) | |||||||||
| Other_name | CELE_B0286.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ntl-2 | ||||||||
| DB_info | Database | AceView | gene | 2E664 | |||||
| WormQTL | gene | WBGene00003825 | |||||||
| WormFlux | gene | WBGene00003825 | |||||||
| NDB | locus_tag | CELE_B0286.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003825|UniProtKB=Q10923 | |||||||
| family | PTHR23326 | ||||||||
| NCBI | gene | 173773 | |||||||
| RefSeq | protein | NM_001393050.1 | |||||||
| NM_001047261.5 | |||||||||
| NM_062372.6 | |||||||||
| NM_062371.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF313102 | |||||||
| TrEMBL | UniProtAcc | B2MZA9 | |||||||
| Q95QZ4 | |||||||||
| Q95QZ3 | |||||||||
| Q10923 | |||||||||
| UniProt_GCRP | UniProtAcc | Q10923 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ntl | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00035974 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006259 | ||||||||
| 00058957 | |||||||||
| 00058958 | |||||||||
| 00058959 | |||||||||
| 00058960 | |||||||||
| 00058961 | |||||||||
| 00058962 | |||||||||
| 00115898 | |||||||||
| 00115899 | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00006499 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003826 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening and positive regulation of transcription elongation by RNA polymerase II. Predicted to be part of CCR4-NOT core complex. Is an ortholog of human CNOT2 (CCR4-NOT transcription complex subunit 2). | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0286.4a | |||||||
| B0286.4b | |||||||||
| B0286.4c | |||||||||
| B0286.4d | |||||||||
| Corresponding_transcript (12) | |||||||||
| Other_sequence (105) | |||||||||
| Associated_feature | WBsf649999 | ||||||||
| WBsf650000 | |||||||||
| WBsf650001 | |||||||||
| WBsf665459 | |||||||||
| WBsf665460 | |||||||||
| WBsf981186 | |||||||||
| WBsf987581 | |||||||||
| WBsf222915 | |||||||||
| Experimental_info | RNAi_result (31) | ||||||||
| Expr_pattern | Chronogram1068 | ||||||||
| Expr5043 | |||||||||
| Expr1010747 | |||||||||
| Expr1031800 | |||||||||
| Expr1143071 | |||||||||
| Expr2014512 | |||||||||
| Expr2032751 | |||||||||
| Drives_construct | WBCnstr00003976 | ||||||||
| Microarray_results (48) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction (94) | |||||||||
| Map_info | Map | II | Position | -4.74458 | Error | 0.005974 | |||
| Positive | Positive_clone | B0286 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4473 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029211 | ||||||||
| WBPaper00031487 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043886 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| WBPaper00066805 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
