WormBase Tree Display for Gene: WBGene00003742
expand all nodes | collapse all nodes | view schema
WBGene00003742 | SMap | S_parent | Sequence | F59C6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nlp-4 | Person_evidence | WBPerson242 | |||||
Sequence_name | F59C6.6 | ||||||||
Molecular_name | F59C6.6 | ||||||||
F59C6.6.1 | |||||||||
CE45987 | |||||||||
Other_name | CELE_F59C6.6 | Accession_evidence | NDB | BX284601 | |||||
Public_name | nlp-4 | ||||||||
DB_info | Database | AceView | gene | 1L94 | |||||
WormQTL | gene | WBGene00003742 | |||||||
WormFlux | gene | WBGene00003742 | |||||||
NDB | locus_tag | CELE_F59C6.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003742|UniProtKB=Q93832 | |||||||
family | PTHR21700 | ||||||||
NCBI | gene | 172932 | |||||||
RefSeq | protein | NM_060349.6 | |||||||
TrEMBL | UniProtAcc | Q93832 | |||||||
UniProt_GCRP | UniProtAcc | Q93832 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 28 Mar 2011 09:48:56 | WBPerson1983 | Event | Split_into | WBGene00206464 | ||||
Split_into | WBGene00206464 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nlp | ||||||||
Allele (12) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00082353 | ||||||||
00106551 | |||||||||
Ortholog (20) | |||||||||
Paralog (62) | |||||||||
Structured_description | Concise_description | nlp-4 encodes three predicted neuropeptide-like proteins; nlp-4 has no none homologs in other nematode species, and its expression pattern has not been determined; in addition, as loss of nlp-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-4-encoded peptides in development and/or behavior is not yet known. | Paper_evidence | WBPaper00004402 | |||||
WBPaper00004975 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F59C6.6 | |||||||
Corresponding_CDS_history | F59C6.6:wp225 | ||||||||
Corresponding_transcript | F59C6.6.1 | ||||||||
Other_sequence | CBC06568_1 | ||||||||
Associated_feature | WBsf649582 | ||||||||
WBsf981090 | |||||||||
WBsf985024 | |||||||||
WBsf1010559 | |||||||||
WBsf220253 | |||||||||
Experimental_info | RNAi_result | WBRNAi00003867 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00049165 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1698 | ||||||||
Expr1025584 | |||||||||
Expr1152912 | |||||||||
Expr2014313 | |||||||||
Expr2032554 | |||||||||
Drives_construct | WBCnstr00010389 | ||||||||
WBCnstr00035901 | |||||||||
Construct_product | WBCnstr00035901 | ||||||||
Microarray_results | SMD_F59C6.6 | ||||||||
178759_at | |||||||||
Aff_F59C6.6 | |||||||||
GPL14144_F59C6.6_111-170_0.933_9_A | |||||||||
GPL14144_F59C6.6_211-270_0.926_12_B | |||||||||
GPL14144_F59C6.6_86-145_0.928_11_C | |||||||||
GPL19516_CGZ0025566 | |||||||||
GPL21109_F59C6.6 | |||||||||
GPL8673_F59C6_6P00106 | |||||||||
GPL8673_F59C6_6P00118 | |||||||||
Expression_cluster (143) | |||||||||
Interaction | WBInteraction000302969 | ||||||||
WBInteraction000400358 | |||||||||
WBInteraction000432011 | |||||||||
WBInteraction000459701 | |||||||||
Map_info | Map | I | Position | 5.05462 | Error | 3.3e-05 | |||
Positive | Positive_clone | F59C6 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003915 | ||||||||
WBPaper00004975 | |||||||||
WBPaper00006465 | |||||||||
WBPaper00026655 | |||||||||
WBPaper00031998 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |