WormBase Tree Display for Gene: WBGene00003609
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WBGene00003609 | Evidence | Paper_evidence | WBPaper00003416 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | B0280 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhr | ||||||
Allele (35) | |||||||
Legacy_information | NMK. Nuclear hormone receptor superfamily.[GR] | ||||||
[C.elegansII] NMK. Nuclear hormone receptor superfamily. Sequenced: B0280.8. [GR] | |||||||
Strain | WBStrain00034789 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (17) | |||||||
Ortholog (30) | |||||||
Paralog (216) | |||||||
Structured_description | Concise_description | nhr-10 encodes a predicted nuclear hormone receptor diverged from nuclear hormone receptors in other phyla; its mRNA is expressed throughout development with possibly lower expression from the L4 larval to adult stages, and the protein is expressed in neuronal processes. | Paper_evidence | WBPaper00003416 | |||
WBPaper00005573 | |||||||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Part of chromatin. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | B0280.8 | |||||
Corresponding_transcript | B0280.8.1 | ||||||
Other_sequence | CGC00280_1 | ||||||
JI232570.1 | |||||||
FC814817.1 | |||||||
CBC09662_1 | |||||||
JI219127.1 | |||||||
CRC02082_1 | |||||||
JO467980.1 | |||||||
CR10871 | |||||||
CR01764 | |||||||
Associated_feature | WBsf716546 | ||||||
WBsf978506 | |||||||
WBsf992940 | |||||||
WBsf1015194 | |||||||
WBsf226906 | |||||||
WBsf226907 | |||||||
Gene_product_binds (307) | |||||||
Transcription_factor | WBTranscriptionFactor000566 | ||||||
Experimental_info | RNAi_result (17) | ||||||
Expr_pattern | Expr15771 | ||||||
Expr1013269 | |||||||
Expr1031656 | |||||||
Expr1143047 | |||||||
Expr1200357 | |||||||
Expr2014007 | |||||||
Expr2032247 | |||||||
Drives_construct | WBCnstr00021139 | ||||||
WBCnstr00036004 | |||||||
WBCnstr00042514 | |||||||
Construct_product | WBCnstr00016577 | ||||||
WBCnstr00016728 | |||||||
WBCnstr00036004 | |||||||
Microarray_results (21) | |||||||
Expression_cluster (119) | |||||||
Interaction (58) | |||||||
Product_binds_matrix | WBPmat00005560 | ||||||
WBPmat00005561 | |||||||
WBPmat00005575 | |||||||
Map_info | Map | III | Position | -0.790395 | Error | 0.000401 | |
Positive | Positive_clone | B0280 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (16) | |||||||
Remark | Map III Position -0.700000 | ||||||
B0280.3 removed. letter from Ann Sluder : E.coli 'homologue' | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |