WormBase Tree Display for Gene: WBGene00003609
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| WBGene00003609 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | B0280 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-10 | Person_evidence | WBPerson600 | |||||
| Sequence_name | B0280.8 | ||||||||
| Molecular_name | B0280.8 | ||||||||
| B0280.8.1 | |||||||||
| CE00815 | |||||||||
| Other_name | CELE_B0280.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | nhr-10 | ||||||||
| DB_info | Database | AceView | gene | 3I202 | |||||
| WormQTL | gene | WBGene00003609 | |||||||
| WormFlux | gene | WBGene00003609 | |||||||
| NDB | locus_tag | CELE_B0280.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003609|UniProtKB=P41999 | |||||||
| family | PTHR24083 | ||||||||
| NCBI | gene | 175993 | |||||||
| RefSeq | protein | NM_066153.7 | |||||||
| SwissProt | UniProtAcc | P41999 | |||||||
| TREEFAM | TREEFAM_ID | TF321623 | |||||||
| UniProt_GCRP | UniProtAcc | P41999 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (35) | |||||||||
| Legacy_information | NMK. Nuclear hormone receptor superfamily.[GR] | ||||||||
| [C.elegansII] NMK. Nuclear hormone receptor superfamily. Sequenced: B0280.8. [GR] | |||||||||
| Strain | WBStrain00034789 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (30) | |||||||||
| Paralog (216) | |||||||||
| Structured_description | Concise_description | nhr-10 encodes a predicted nuclear hormone receptor diverged from nuclear hormone receptors in other phyla; its mRNA is expressed throughout development with possibly lower expression from the L4 larval to adult stages, and the protein is expressed in neuronal processes. | Paper_evidence | WBPaper00003416 | |||||
| WBPaper00005573 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Part of chromatin. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0280.8 | |||||||
| Corresponding_transcript | B0280.8.1 | ||||||||
| Other_sequence | CGC00280_1 | ||||||||
| JI232570.1 | |||||||||
| FC814817.1 | |||||||||
| CBC09662_1 | |||||||||
| JI219127.1 | |||||||||
| CRC02082_1 | |||||||||
| JO467980.1 | |||||||||
| CR10871 | |||||||||
| CR01764 | |||||||||
| Associated_feature | WBsf716546 | ||||||||
| WBsf978506 | |||||||||
| WBsf992940 | |||||||||
| WBsf1015194 | |||||||||
| WBsf226906 | |||||||||
| WBsf226907 | |||||||||
| Gene_product_binds (307) | |||||||||
| Transcription_factor | WBTranscriptionFactor000566 | ||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr15771 | ||||||||
| Expr1013269 | |||||||||
| Expr1031656 | |||||||||
| Expr1143047 | |||||||||
| Expr1200357 | |||||||||
| Expr2014007 | |||||||||
| Expr2032247 | |||||||||
| Drives_construct | WBCnstr00021139 | ||||||||
| WBCnstr00036004 | |||||||||
| WBCnstr00042514 | |||||||||
| Construct_product | WBCnstr00016577 | ||||||||
| WBCnstr00016728 | |||||||||
| WBCnstr00036004 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction (58) | |||||||||
| Product_binds_matrix | WBPmat00005560 | ||||||||
| WBPmat00005561 | |||||||||
| WBPmat00005575 | |||||||||
| Map_info | Map | III | Position | -0.790395 | Error | 0.000401 | |||
| Positive | Positive_clone | B0280 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Map III Position -0.700000 | ||||||||
| B0280.3 removed. letter from Ann Sluder : E.coli 'homologue' | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
