WormBase Tree Display for Gene: WBGene00003081
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| WBGene00003081 | Evidence | Person_evidence | WBPerson1846 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK593 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | lsm-7 | |||||||
| Sequence_name | ZK593.7 | ||||||||
| Molecular_name | ZK593.7 | ||||||||
| ZK593.7.1 | |||||||||
| CE06628 | |||||||||
| Other_name | CELE_ZK593.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | lsm-7 | ||||||||
| DB_info | Database | AceView | gene | 4L699 | |||||
| WormQTL | gene | WBGene00003081 | |||||||
| WormFlux | gene | WBGene00003081 | |||||||
| NDB | locus_tag | CELE_ZK593.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003081|UniProtKB=Q23543 | |||||||
| family | PTHR10553 | ||||||||
| NCBI | gene | 177988 | |||||||
| RefSeq | protein | NM_069633.6 | |||||||
| TREEFAM | TREEFAM_ID | TF314385 | |||||||
| TrEMBL | UniProtAcc | Q23543 | |||||||
| UniProt_GCRP | UniProtAcc | Q23543 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lsm | ||||||||
| Allele (19) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00004920 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to contribute to RNA binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Lsm1-7-Pat1 complex and ribonucleoprotein complex. Is an ortholog of human LSM7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated). | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK593.7 | |||||||
| Corresponding_transcript | ZK593.7.1 | ||||||||
| Other_sequence (42) | |||||||||
| Associated_feature | WBsf229066 | ||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr1021213 | ||||||||
| Expr1031456 | |||||||||
| Expr1162946 | |||||||||
| Expr2013294 | |||||||||
| Expr2031525 | |||||||||
| Drives_construct | WBCnstr00036244 | ||||||||
| Construct_product | WBCnstr00036244 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (260) | |||||||||
| Map_info | Map | IV | Position | 4.75256 | Error | 0.000968 | |||
| Positive | Positive_clone | ZK593 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025139 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046572 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059527 | |||||||||
| WBPaper00065026 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
