WormBase Tree Display for Gene: WBGene00002261
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WBGene00002261 | SMap | S_parent | Sequence | F58A3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | ldb-1 | Person_evidence | WBPerson83 | |||||
Sequence_name | F58A3.1 | ||||||||
Molecular_name (11) | |||||||||
Other_name | CELE_F58A3.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | ldb-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ldb | ||||||||
Allele (175) | |||||||||
Strain | WBStrain00035330 | ||||||||
WBStrain00035331 | |||||||||
WBStrain00035332 | |||||||||
WBStrain00035942 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog (28) | |||||||||
Structured_description | Concise_description | ldb-1 encodes an Ldb/NLI/Clim member of the nuclear LIM binding protein family that affects coordinated locomotion, vulval development, mechanosensation, and growth of larvae and is required for transcriptional activation of mec-2; can interact with MEC-3 to activate transcription using yeast two-hybrid assays and is expressed in all neurons, vulval cells, gonadal sheath cells, and in some body muscle cells. | Paper_evidence | WBPaper00004360 | |||||
WBPaper00005654 | |||||||||
WBPaper00006395 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables DNA-binding transcription factor activity; DNA-binding transcription factor binding activity; and LIM domain binding activity. Involved in several processes, including mechanosensory behavior; positive regulation of vulval development; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Expressed in several structures, including AIY; body wall musculature; gonad; neurons; and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F58A3.1a | |||||||
F58A3.1b | |||||||||
F58A3.1c | |||||||||
Corresponding_transcript | F58A3.1a.1 | ||||||||
F58A3.1a.2 | |||||||||
F58A3.1b.1 | |||||||||
F58A3.1b.2 | |||||||||
F58A3.1c.1 | |||||||||
Other_sequence (35) | |||||||||
Associated_feature (36) | |||||||||
Experimental_info | RNAi_result (28) | ||||||||
Expr_pattern (12) | |||||||||
Drives_construct | WBCnstr00001140 | ||||||||
WBCnstr00001141 | |||||||||
WBCnstr00001142 | |||||||||
WBCnstr00012735 | |||||||||
WBCnstr00013820 | |||||||||
WBCnstr00015067 | |||||||||
WBCnstr00036350 | |||||||||
WBCnstr00042256 | |||||||||
Construct_product | WBCnstr00036350 | ||||||||
Microarray_results (38) | |||||||||
Expression_cluster (168) | |||||||||
Interaction (54) | |||||||||
Map_info | Map | X | Position | 2.85696 | Error | 0.000347 | |||
Positive | Positive_clone | F58A3 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4384 | |||||||
Pseudo_map_position | |||||||||
Reference (13) | |||||||||
Remark | Sequence connection from [Cassata G, Burglin T] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |