WormBase Tree Display for Gene: WBGene00002057
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| WBGene00002057 | SMap | S_parent | Sequence | R04E5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ifd-1 | |||||||
| Sequence_name | R04E5.10 | ||||||||
| Molecular_name | R04E5.10 | ||||||||
| R04E5.10.1 | |||||||||
| CE30100 | |||||||||
| Other_name | IF D1 | ||||||||
| CELE_R04E5.10 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | ifd-1 | ||||||||
| DB_info | Database | AceView | gene | XJ442 | |||||
| WormQTL | gene | WBGene00002057 | |||||||
| WormFlux | gene | WBGene00002057 | |||||||
| NDB | locus_tag | CELE_R04E5.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002057|UniProtKB=Q86DC6 | |||||||
| family | PTHR45721 | ||||||||
| NCBI | gene | 187585 | |||||||
| RefSeq | protein | NM_001029659.5 | |||||||
| SwissProt | UniProtAcc | Q86DC6 | |||||||
| UniProt_GCRP | UniProtAcc | Q86DC6 | |||||||
| OMIM | gene | 150340 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ifd | ||||||||
| Allele (71) | |||||||||
| Strain | WBStrain00032547 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (26) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | ifd-1 encodes two isoforms of a nonessential intermediate filament protein; IFD-1 is predicted to function as a structural component of the cytoskeleton; IFD-1 has no obvious function in RNAi assays. | Paper_evidence | WBPaper00004761 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in several processes, including heterochromatin formation; nucleus organization; and protein localization to nuclear envelope. Predicted to be located in nuclear envelope and nuclear lamina. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0051037 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6637) | ||||
| DOID:0051014 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6637) | ||||||
| DOID:0060785 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6637) | ||||||
| Molecular_info | Corresponding_CDS | R04E5.10 | |||||||
| Corresponding_CDS_history | R04E5.10b:wp272 | ||||||||
| Corresponding_transcript | R04E5.10.1 | ||||||||
| Other_sequence | JI175145.1 | ||||||||
| Associated_feature | WBsf654239 | ||||||||
| WBsf670860 | |||||||||
| WBsf670861 | |||||||||
| WBsf1006256 | |||||||||
| WBsf1023474 | |||||||||
| WBsf1023475 | |||||||||
| WBsf237721 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr3399 | ||||||||
| Expr1015835 | |||||||||
| Expr1031210 | |||||||||
| Expr1154946 | |||||||||
| Expr2012683 | |||||||||
| Expr2030919 | |||||||||
| Drives_construct | WBCnstr00011378 | ||||||||
| WBCnstr00036487 | |||||||||
| Construct_product | WBCnstr00036487 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (231) | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | X | Position | 0.412533 | Error | 0.003557 | |||
| Positive | Positive_clone | R04E5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Sequence connection from [Karabinos A, Weber K]. krb 13/11/01 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
