WormBase Tree Display for Gene: WBGene00001954
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WBGene00001954 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | ZK682 | ||||||
Identity | Version | 3 | |||||||
Name | CGC_name | hlh-10 | Person_evidence | WBPerson346 | |||||
Sequence_name | ZK682.4 | ||||||||
Molecular_name | ZK682.4 | ||||||||
ZK682.4.1 | |||||||||
CE47615 | |||||||||
Other_name | CeABF-1 | ||||||||
CELE_ZK682.4 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | hlh-10 | ||||||||
DB_info | Database | AceView | gene | 5J758 | |||||
WormQTL | gene | WBGene00001954 | |||||||
WormFlux | gene | WBGene00001954 | |||||||
NDB | locus_tag | CELE_ZK682.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001954|UniProtKB=Q23579 | |||||||
family | PTHR23349 | ||||||||
NCBI | gene | 191402 | |||||||
RefSeq | protein | NM_073000.4 | |||||||
SwissProt | UniProtAcc | Q23579 | |||||||
UniProt_GCRP | UniProtAcc | Q23579 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
3 | 11 Mar 2021 09:37:10 | WBPerson1983 | Name_change | Other_name | CeABF-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hlh | ||||||||
Allele (27) | |||||||||
Strain | WBStrain00002261 | ||||||||
WBStrain00031463 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Ortholog (32) | |||||||||
Paralog | WBGene00001953 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00001962 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00001957 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00001981 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00001956 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Automated_description | Enables protein heterodimerization activity and transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus. Expressed in ADLL; ADLR; ASEL; ASER; and neurons. Human ortholog(s) of this gene implicated in coronary artery disease and ventricular septal defect. Is an ortholog of human MSC (musculin) and TCF21 (transcription factor 21). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:1657 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11632) | ||||
DOID:3393 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11632) | ||||||
Molecular_info | Corresponding_CDS | ZK682.4 | |||||||
Corresponding_CDS_history | ZK682.4:wp231 | ||||||||
Corresponding_transcript | ZK682.4.1 | ||||||||
Other_sequence | CJC01351_1 | ||||||||
Associated_feature | WBsf652900 | ||||||||
WBsf652901 | |||||||||
WBsf978808 | |||||||||
WBsf1000852 | |||||||||
WBsf1000853 | |||||||||
WBsf1000854 | |||||||||
WBsf1020148 | |||||||||
Transcription_factor | WBTranscriptionFactor000067 | ||||||||
WBTranscriptionFactor000077 | |||||||||
Experimental_info | RNAi_result | WBRNAi00038417 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059660 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022129 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram385 | ||||||||
Expr1673 | |||||||||
Expr2960 | |||||||||
Expr7899 | |||||||||
Expr14595 | |||||||||
Expr1011155 | |||||||||
Expr1163072 | |||||||||
Expr2012490 | |||||||||
Expr2030729 | |||||||||
Drives_construct | WBCnstr00004463 | ||||||||
WBCnstr00011045 | |||||||||
WBCnstr00012976 | |||||||||
WBCnstr00036564 | |||||||||
WBCnstr00041175 | |||||||||
Construct_product | WBCnstr00016001 | ||||||||
WBCnstr00036564 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (57) | |||||||||
Interaction (25) | |||||||||
Map_info | Map | V | Position | 1.974 | Error | 0.002284 | |||
Positive | Positive_clone | ZK682 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4405 | |||||||
5401 | |||||||||
5405 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00010373 | ||||||||
WBPaper00010818 | |||||||||
WBPaper00013489 | |||||||||
WBPaper00027309 | |||||||||
WBPaper00030829 | |||||||||
WBPaper00034761 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00049921 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |