WormBase Tree Display for Gene: WBGene00001864
expand all nodes | collapse all nodes | view schema
WBGene00001864 | SMap | S_parent | Sequence | D1086 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | him-5 | Person_evidence | WBPerson261 | |||||
Sequence_name | D1086.4 | ||||||||
Molecular_name | D1086.4a | ||||||||
D1086.4a.1 | |||||||||
CE09062 | |||||||||
D1086.4b | |||||||||
CE45310 | |||||||||
D1086.4b.1 | |||||||||
Other_name | CELE_D1086.4 | Accession_evidence | NDB | BX284605 | |||||
Public_name | him-5 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00001864 | |||||
WormFlux | gene | WBGene00001864 | |||||||
NDB | locus_tag | CELE_D1086.4 | |||||||
NCBI | gene | 183932 | |||||||
RefSeq | protein | NM_001269627.3 | |||||||
NM_001269626.2 | |||||||||
TrEMBL | UniProtAcc | O17724 | |||||||
E1B6V2 | |||||||||
UniProt_GCRP | UniProtAcc | O17724 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 22 Aug 2008 17:09:12 | WBPerson2970 | Event | Acquires_merge | WBGene00008391 | ||||
Name_change | Sequence_name | D1086.4 | |||||||
Acquires_merge | WBGene00008391 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | him | ||||||||
Reference_allele | WBVar00144023 | ||||||||
Allele (47) | |||||||||
Legacy_information | e1467ts : at 20x self-progeny 16% XO male 11% ova are nullo-X as a result of reductional meiotic nondisjunction; X chromosome recombination specifically reduced 50%. ES3 (progeny). ME3. NA2 (e1490 (stronger allele : 33% Him at 20x)). | ||||||||
See also e1467, e1490 | |||||||||
[C.elegansII] e1467ts : at 20C self-progeny 16% XO male, 3% 3X herm, 11% ova are nullo-X as a result of reductional meiotic nondisjunction; X chromosome recombination specifically reduced 50% or more, except at left end (increased); additional sterility not due to autosomal nondisjunction ( brood reduced 64% at 25C); some embryonic lethality. ES3 (progeny). ME3. OA4: e1490 (stronger allele : 33% Him at 20C)). Cloned: cosmid rescue K02A12. [Hodgkin et al. 1979; Broverman and Meneely 1994; FH] | |||||||||
Strain (490) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00007641 | ||||||||
00028919 | |||||||||
00028920 | |||||||||
00028921 | |||||||||
Ortholog | chrV_pilon.g16429 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
Structured_description | Concise_description | him-5 was identified in screens for genes that when mutated resulted in an increased frequency of X chromosome nondisjunction and thus, an increased frequency of genotypically XO males in self-fertile populations; him-5 functions in X chromosome dynamics by regulating the number and distribution of X chromosome pairing events. | Paper_evidence | WBPaper00000179 | |||||
WBPaper00001852 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 28 Oct 2010 00:00:00 | ||||||||
Automated_description | Involved in meiotic DNA double-strand break formation involved in reciprocal meiotic recombination and meiotic chromosome segregation. Located in condensed chromosome. Expressed in gonad. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | D1086.4a | |||||||
D1086.4b | |||||||||
Corresponding_transcript | D1086.4a.1 | ||||||||
D1086.4b.1 | |||||||||
Associated_feature | WBsf647510 | ||||||||
WBsf232867 | |||||||||
WBsf232868 | |||||||||
WBsf232869 | |||||||||
Experimental_info | RNAi_result | WBRNAi00030368 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00111474 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012552 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061770 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00043422 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00111473 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9917 | ||||||||
Expr1023729 | |||||||||
Expr1031097 | |||||||||
Expr1147415 | |||||||||
Expr2012430 | |||||||||
Expr2030666 | |||||||||
Drives_construct | WBCnstr00036641 | ||||||||
WBCnstr00038151 | |||||||||
Construct_product | WBCnstr00036641 | ||||||||
WBCnstr00038150 | |||||||||
WBCnstr00038151 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (138) | |||||||||
Interaction (68) | |||||||||
Map_info | Map | V | Position | 6.09216 | Error | 0.018285 | |||
Well_ordered | |||||||||
Positive | Positive_clone | D1086 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | 2_point | 308 | |||||||
6177 | |||||||||
Multi_point (33) | |||||||||
Pos_neg_data | 1761 | ||||||||
4301 | |||||||||
6866 | |||||||||
7401 | |||||||||
Landmark_gene | |||||||||
Reference (242) | |||||||||
Remark | This locus was previously connected to Y54G2A.1 which was a mistake [030212 krb] | ||||||||
Method | Gene |