WormBase Tree Display for Gene: WBGene00001839
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| WBGene00001839 | SMap | S_parent | Sequence | ZK829 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hdl-1 | Person_evidence | WBPerson36 | |||||
| Sequence_name | ZK829.2 | ||||||||
| Molecular_name | ZK829.2 | ||||||||
| ZK829.2.1 | |||||||||
| CE40593 | |||||||||
| Other_name | Fragment R | Paper_evidence | WBPaper00001689 | ||||||
| CELE_ZK829.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | hdl-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hdl | ||||||||
| Allele (58) | |||||||||
| Strain | WBStrain00031737 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00000239 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006562 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015467 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006409 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004981 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006418 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006762 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007593 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022427 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | hdl-1 encodes a protein with similarity to aromatic amino acid and histidine decarboxylases; sequence comparisons indicate that HDL-1 is much larger than typical aromatic amino acid decarboxylases, containing extended N- and C-terminal domains not found in other pyridoxal-5'-phosphate-dependent decarboxylases. | Paper_evidence | WBPaper00024422 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Aug 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable carboxy-lyase activity. Predicted to be involved in amino acid metabolic process and dopamine biosynthetic process. Predicted to be located in cytoplasm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK829.2 | |||||||
| Corresponding_CDS_history | ZK829.2:wp167 | ||||||||
| Corresponding_transcript | ZK829.2.1 | ||||||||
| Associated_feature | WBsf230939 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00059748 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038455 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024721 | ||||||||
| Expr1163173 | |||||||||
| Expr2012390 | |||||||||
| Expr2030626 | |||||||||
| Drives_construct | WBCnstr00036654 | ||||||||
| Construct_product | WBCnstr00036654 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (137) | |||||||||
| Interaction (51) | |||||||||
| Map_info | Map | IV | Position | 5.44927 | Error | 0.003747 | |||
| Positive | Inside_rearr | sDf83 | |||||||
| Positive_clone | ZK829 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | Multi_point | 4676 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001689 | ||||||||
| WBPaper00024422 | |||||||||
| WBPaper00065140 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
