WormBase Tree Display for Gene: WBGene00001569
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WBGene00001569 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F52D2 | ||||
Identity | Version | 2 | |||||
Name | CGC_name | meg-3 | Person_evidence | WBPerson261 | |||
WBPerson9884 | |||||||
WBPerson575 | |||||||
Sequence_name | F52D2.4 | ||||||
Molecular_name | F52D2.4 | ||||||
F52D2.4.1 | |||||||
CE23757 | |||||||
Other_name | gei-12 | Person_evidence | WBPerson1796 | ||||
CELE_F52D2.4 | Accession_evidence | NDB | BX284606 | ||||
Public_name | meg-3 | ||||||
DB_info | Database | AceView | gene | XC606 | |||
WormQTL | gene | WBGene00001569 | |||||
WormFlux | gene | WBGene00001569 | |||||
NDB | locus_tag | CELE_F52D2.4 | |||||
NCBI | gene | 180510 | |||||
RefSeq | protein | NM_075966.6 | |||||
TREEFAM | TREEFAM_ID | TF322203 | |||||
TrEMBL | UniProtAcc | Q9TXM1 | |||||
UniProt_GCRP | UniProtAcc | Q9TXM1 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | meg | ||||||
Allele (59) | |||||||
Strain (23) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (16) | |||||||
Ortholog | chrX_pilon.g18541 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Paralog | WBGene00018688 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00016485 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00219451 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | meg-3 encodes a novel protein that affects embryonic viability and development of the hypodermis; MEG-3 interacts with GEX-3 in yeast two-hybrid assays, and is expressed in all somatic cells. | Paper_evidence | WBPaper00005194 | |||
Curator_confirmed | WBPerson48 | ||||||
WBPerson1843 | |||||||
Date_last_updated | 30 Jan 2015 00:00:00 | ||||||
Automated_description | Involved in embryo development; gamete generation; and organelle localization. Located in P granule. Expressed in several structures, including germ cell and oocyte. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F52D2.4 | |||||
Corresponding_transcript | F52D2.4.1 | ||||||
Associated_feature | WBsf653716 | ||||||
WBsf1004196 | |||||||
WBsf1022389 | |||||||
WBsf237042 | |||||||
Experimental_info | RNAi_result | WBRNAi00024287 | Inferred_automatically | RNAi_primary | |||
WBRNAi00047973 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00061662 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015403 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00032611 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr2089 | ||||||
Expr12114 | |||||||
Expr12116 | |||||||
Expr1030938 | |||||||
Expr1151789 | |||||||
Expr2013510 | |||||||
Expr2031744 | |||||||
Drives_construct | WBCnstr00021878 | ||||||
WBCnstr00037968 | |||||||
Construct_product | WBCnstr00021878 | ||||||
WBCnstr00022631 | |||||||
WBCnstr00037968 | |||||||
WBCnstr00040205 | |||||||
Regulate_expr_cluster | WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated | ||||||
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated | |||||||
WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_downregulated_endo-siRNA_targets | |||||||
WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_upregulated_endo-siRNA_targets | |||||||
WBPaper00057162:meg-3_meg-4_downregulated_sRNA | |||||||
WBPaper00057162:meg-3_meg-4_upregulated_sRNA | |||||||
WBPaper00059174:MEG-3_interacting | |||||||
Antibody | WBAntibody00002617 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (223) | |||||||
Interaction (100) | |||||||
Map_info | Map | X | Position | -17.0968 | Error | 0.017536 | |
Positive | Positive_clone | F52D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (24) | |||||||
Remark | Sequence connection from [Qadota H, Kaibuchi K] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |