WormBase Tree Display for Gene: WBGene00001560
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| WBGene00001560 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_X | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | gei-3 | Person_evidence | WBPerson1796 | |||||
| Sequence_name | T22H6.6 | ||||||||
| Molecular_name | T22H6.6a | ||||||||
| T22H6.6a.1 | |||||||||
| CE31625 | |||||||||
| T22H6.6b | |||||||||
| CE40397 | |||||||||
| T22H6.6c | |||||||||
| CE40398 | |||||||||
| T22H6.6b.1 | |||||||||
| T22H6.6c.1 | |||||||||
| Other_name | CELE_T22H6.6 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | gei-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00001560 | |||||
| WormFlux | gene | WBGene00001560 | |||||||
| NDB | locus_tag | CELE_T22H6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001560|UniProtKB=G5EBG6 | |||||||
| family | PTHR13059 | ||||||||
| NCBI | gene | 184597 | |||||||
| RefSeq | protein | NM_001083303.5 | |||||||
| NM_001083305.4 | |||||||||
| NM_001083304.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF316400 | |||||||
| TrEMBL | UniProtAcc | Q0G833 | |||||||
| Q0G834 | |||||||||
| G5EBG6 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EBG6 | |||||||
| OMIM | gene | 612082 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gei | ||||||||
| Allele (325) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00008934 | ||||||||
| 00008935 | |||||||||
| 00008936 | |||||||||
| 00008937 | |||||||||
| 00008938 | |||||||||
| 00008939 | |||||||||
| 00008940 | |||||||||
| 00008941 | |||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | gei-3 encodes a member of the high mobility group (HMG) protein family; interacts with GEX-3 in yeast two-hybrid assays. | Paper_evidence | WBPaper00005194 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head neurons; intestine; and tail neurons. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 45. Is an ortholog of human CIC (capicua transcriptional repressor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080236 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14214) | ||||
| Molecular_info | Corresponding_CDS | T22H6.6a | |||||||
| T22H6.6b | |||||||||
| T22H6.6c | |||||||||
| Corresponding_transcript | T22H6.6a.1 | ||||||||
| T22H6.6b.1 | |||||||||
| T22H6.6c.1 | |||||||||
| Other_sequence | CBC13183_1 | ||||||||
| JI164263.1 | |||||||||
| Oden_isotig22086 | |||||||||
| Dviv_isotig29054 | |||||||||
| Associated_feature (38) | |||||||||
| Transcription_factor | WBTranscriptionFactor000275 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00053875 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053874 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024299 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012326 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107246 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019050 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7675 | ||||||||
| Expr1016878 | |||||||||
| Expr1030930 | |||||||||
| Expr1157422 | |||||||||
| Expr1200039 | |||||||||
| Expr2012014 | |||||||||
| Expr2030250 | |||||||||
| Drives_construct | WBCnstr00012820 | ||||||||
| WBCnstr00036860 | |||||||||
| Construct_product | WBCnstr00016698 | ||||||||
| WBCnstr00036860 | |||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction (55) | |||||||||
| Map_info | Map | X | Position | 8.4799 | Error | 0.017354 | |||
| Positive | Positive_clone | T22H6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005194 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00064898 | |||||||||
| WBPaper00065841 | |||||||||
| Remark | Sequence connection from [Qadota H, Kaibuchi K] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
