WormBase Tree Display for Gene: WBGene00001435
expand all nodes | collapse all nodes | view schema
| WBGene00001435 | SMap | S_parent | Sequence | C29F7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | fkh-3 | Person_evidence | WBPerson411 | |||||
| Sequence_name | C29F7.4 | ||||||||
| Molecular_name | C29F7.4a | ||||||||
| C29F7.4a.1 | |||||||||
| CE50018 | |||||||||
| C29F7.4b | |||||||||
| CE50009 | |||||||||
| C29F7.4b.1 | |||||||||
| Other_name | CELE_C29F7.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | fkh-3 | ||||||||
| DB_info | Database | AceView | gene | XO40 | |||||
| WormQTL | gene | WBGene00001435 | |||||||
| WormFlux | gene | WBGene00001435 | |||||||
| NDB | locus_tag | CELE_C29F7.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001435|UniProtKB=A0A078BQN7 | |||||||
| family | PTHR11829 | ||||||||
| NCBI | gene | 181465 | |||||||
| RefSeq | protein | NM_001307893.4 | |||||||
| NM_001307894.4 | |||||||||
| SwissProt | UniProtAcc | A0A078BQN7 | |||||||
| UniProt_GCRP | UniProtAcc | A0A078BQN7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fkh | ||||||||
| Allele (32) | |||||||||
| Strain | WBStrain00035363 | ||||||||
| WBStrain00035364 | |||||||||
| WBStrain00035609 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00001437 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001436 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00045185 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Concise_description | fkh-3 encodes one of 15 C. elegans forkhead transcription factors; triply mutant animals with reduced activity of fkh-3, fkh-4, and fkh-5 show reduced expression of 21U-RNA transcripts; in vitro, FKH-3 binds a consensus regulatory element found upstream of 21U-RNAs; an FKH-3 reporter fusion is expressed in most, but not all, cells of the early embryo from the 20- to the 200-cell stage. | Paper_evidence | WBPaper00005730 | |||||
| WBPaper00041348 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 07 Oct 2014 00:00:00 | ||||||||
| Automated_description | Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C29F7.4a | |||||||
| C29F7.4b | |||||||||
| Corresponding_CDS_history | C29F7.4:wp244 | ||||||||
| Corresponding_transcript | C29F7.4a.1 | ||||||||
| C29F7.4b.1 | |||||||||
| Associated_feature | WBsf978369 | ||||||||
| WBsf1007611 | |||||||||
| WBsf238134 | |||||||||
| Transcription_factor | WBTranscriptionFactor000166 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00029329 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00113568 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022894 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041481 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011347 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022895 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram84 | ||||||||
| Chronogram1173 | |||||||||
| Expr2335 | |||||||||
| Expr7455 | |||||||||
| Expr1015906 | |||||||||
| Expr1030860 | |||||||||
| Expr1145510 | |||||||||
| Expr1200136 | |||||||||
| Expr2011805 | |||||||||
| Expr2030043 | |||||||||
| Drives_construct | WBCnstr00001173 | ||||||||
| WBCnstr00001174 | |||||||||
| WBCnstr00010771 | |||||||||
| WBCnstr00012599 | |||||||||
| WBCnstr00036951 | |||||||||
| Construct_product | WBCnstr00016778 | ||||||||
| WBCnstr00021801 | |||||||||
| WBCnstr00022533 | |||||||||
| WBCnstr00036951 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (182) | |||||||||
| Interaction (59) | |||||||||
| Map_info | Map | X | Position | 12.0953 | Error | 0.10388 | |||
| Positive | Positive_clone | C29F7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4311 | |||||||
| 4506 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005730 | ||||||||
| WBPaper00011551 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00029337 | |||||||||
| WBPaper00041348 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
