WormBase Tree Display for Gene: WBGene00001050
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| WBGene00001050 | SMap | S_parent | Sequence | F54C1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dom-3 | Person_evidence | WBPerson632 | |||||
| Sequence_name | F54C1.2 | ||||||||
| Molecular_name | F54C1.2 | ||||||||
| F54C1.2.1 | |||||||||
| CE11044 | |||||||||
| Other_name | CELE_F54C1.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | dom-3 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dom | ||||||||
| Allele (22) | |||||||||
| Legacy_information | [C.elegansII] NMK. Novel predicted protein. Downstream gene in operon with mes-3. [Zorio et al. 1994; SS] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP1212 | ||||||||
| Ortholog (53) | |||||||||
| Paralog | WBGene00045308 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00045401 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00008561 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010821 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012959 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010822 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00012961 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010825 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012960 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable mRNA 5'-diphosphatase activity. Predicted to be involved in NAD-cap decapping and nuclear-transcribed mRNA catabolic process. Predicted to be located in cytosol and nucleus. Is an ortholog of human DXO (decapping exoribonuclease). | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54C1.2 | |||||||
| Corresponding_transcript | F54C1.2.1 | ||||||||
| Other_sequence | Acan_isotig18973 | ||||||||
| Dviv_isotig10934 | |||||||||
| Associated_feature | WBsf217608 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00048245 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027669 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003764 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048244 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062265 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016584 | ||||||||
| Expr1030662 | |||||||||
| Expr1152050 | |||||||||
| Expr2011025 | |||||||||
| Expr2029262 | |||||||||
| Drives_construct | WBCnstr00037120 | ||||||||
| Construct_product | WBCnstr00037120 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | I | Position | -0.428599 | Error | 9.3e-05 | |||
| Positive | Positive_clone | F54C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002153 | ||||||||
| WBPaper00002342 | |||||||||
| WBPaper00005697 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045830 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
