WormBase Tree Display for Gene: WBGene00000778
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WBGene00000778 | Evidence | Person_evidence | WBPerson567 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | D1069 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | cpn-2 | Person_evidence | WBPerson268 | |||||
Sequence_name | D1069.2 | ||||||||
Molecular_name | D1069.2a | ||||||||
D1069.2a.1 | |||||||||
CE38495 | |||||||||
D1069.2b | |||||||||
CE50780 | |||||||||
D1069.2b.1 | |||||||||
Other_name | CELE_D1069.2 | Accession_evidence | NDB | BX284602 | |||||
Public_name | cpn-2 | ||||||||
DB_info | Database | AceView | gene | 2A629 | |||||
WormQTL | gene | WBGene00000778 | |||||||
WormFlux | gene | WBGene00000778 | |||||||
NDB | locus_tag | CELE_D1069.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000778|UniProtKB=O44788 | |||||||
family | PTHR18959 | ||||||||
NCBI | gene | 173424 | |||||||
RefSeq | protein | NM_001313598.3 | |||||||
NM_061312.6 | |||||||||
TrEMBL | UniProtAcc | O44788 | |||||||
A0A0K3AWU9 | |||||||||
UniProt_GCRP | UniProtAcc | O44788 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cpn | ||||||||
Allele (27) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00001454 | ||||||||
00001455 | |||||||||
00001456 | |||||||||
Ortholog (67) | |||||||||
Paralog | WBGene00000777 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00006819 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00020808 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00019361 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00016898 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000779 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000780 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | cpn-2 encodes a calponin homolog, more similar to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25 than to calponin per se. | Paper_evidence | WBPaper00012852 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to be located in actin cytoskeleton. Is an ortholog of human TAGLN (transgelin). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | D1069.2a | |||||||
D1069.2b | |||||||||
Corresponding_CDS_history | D1069.2:wp142 | ||||||||
Corresponding_transcript | D1069.2a.1 | ||||||||
D1069.2b.1 | |||||||||
Other_sequence (31) | |||||||||
Associated_feature | WBsf643905 | ||||||||
WBsf717618 | |||||||||
WBsf986386 | |||||||||
WBsf986387 | |||||||||
WBsf220750 | |||||||||
Experimental_info | RNAi_result | WBRNAi00030355 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043404 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012544 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018716 | ||||||||
Expr1030482 | |||||||||
Expr1147390 | |||||||||
Expr2010494 | |||||||||
Expr2028734 | |||||||||
Drives_construct | WBCnstr00037283 | ||||||||
Construct_product | WBCnstr00037283 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (181) | |||||||||
Interaction (146) | |||||||||
Map_info (3) | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |