WormBase Tree Display for Gene: WBGene00000708
expand all nodes | collapse all nodes | view schema
WBGene00000708 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | M199 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | col-135 | Person_evidence | WBPerson345 | |||||
Sequence_name | M199.5 | ||||||||
Molecular_name | M199.5a | ||||||||
M199.5a.1 | |||||||||
CE33807 | |||||||||
M199.5b | |||||||||
CE46447 | |||||||||
M199.5b.1 | |||||||||
Other_name | CELE_M199.5 | Accession_evidence | NDB | BX284604 | |||||
Public_name | col-135 | ||||||||
DB_info | Database | AceView | gene | 4P894 | |||||
WormQTL | gene | WBGene00000708 | |||||||
WormFlux | gene | WBGene00000708 | |||||||
NDB | locus_tag | CELE_M199.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000708|UniProtKB=Q86D04 | |||||||
family | PTHR24023 | ||||||||
NCBI | gene | 3565413 | |||||||
RefSeq | protein | NM_001268930.4 | |||||||
NM_001268929.4 | |||||||||
TrEMBL | UniProtAcc | Q86D04 | |||||||
G3MU58 | |||||||||
UniProt_GCRP | UniProtAcc | Q86D04 | |||||||
OMIM | gene | 120260 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (55) | |||||||||
Strain | WBStrain00050932 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00008537 | ||||||||
00008538 | |||||||||
00008539 | |||||||||
Ortholog (18) | |||||||||
Paralog (161) | |||||||||
Structured_description | Automated_description | Predicted to be located in extracellular matrix and extracellular space. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in Stickler syndrome and multiple epiphyseal dysplasia 2. Is an ortholog of human COL9A2 (collagen type IX alpha 2 chain). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0070298 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2218) | ||||
DOID:2256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2218) | ||||||
DOID:0080046 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2218) | ||||||
Molecular_info | Corresponding_CDS | M199.5a | |||||||
M199.5b | |||||||||
Corresponding_transcript | M199.5a.1 | ||||||||
M199.5b.1 | |||||||||
Other_sequence | HBC12341_1 | ||||||||
EX011737.1 | |||||||||
Experimental_info | Expr_pattern | Expr1014350 | |||||||
Expr1030427 | |||||||||
Expr1154727 | |||||||||
Expr2010330 | |||||||||
Expr2028574 | |||||||||
Drives_construct | WBCnstr00037349 | ||||||||
Construct_product | WBCnstr00037349 | ||||||||
Microarray_results (11) | |||||||||
Expression_cluster (219) | |||||||||
Interaction | WBInteraction000470628 | ||||||||
WBInteraction000473782 | |||||||||
WBInteraction000474523 | |||||||||
Map_info | Map | IV | Position | 12.8394 | |||||
Positive | Positive_clone | M199 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00059172 | |||||||||
WBPaper00065859 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |