WormBase Tree Display for Gene: WBGene00000625
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WBGene00000625 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | Y54E10BL | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | col-48 | Person_evidence | WBPerson345 | |||||
Sequence_name | Y54E10BL.2 | ||||||||
Molecular_name | Y54E10BL.2 | ||||||||
Y54E10BL.2.1 | |||||||||
CE25434 | |||||||||
Other_name | CELE_Y54E10BL.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | col-48 | ||||||||
DB_info | Database | AceView | gene | 1D579 | |||||
WormQTL | gene | WBGene00000625 | |||||||
WormFlux | gene | WBGene00000625 | |||||||
NDB | locus_tag | CELE_Y54E10BL.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000625|UniProtKB=Q9N3D7 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 171873 | |||||||
RefSeq | protein | NM_058687.5 | |||||||
TrEMBL | UniProtAcc | Q9N3D7 | |||||||
UniProt_GCRP | UniProtAcc | Q9N3D7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (29) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00089041 | ||||||||
00089042 | |||||||||
00102404 | |||||||||
Ortholog (25) | |||||||||
Paralog (161) | |||||||||
Structured_description | Concise_description | col-48 encodes a cuticle collagen. | Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 03 Apr 2007 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y54E10BL.2 | |||||||
Corresponding_transcript | Y54E10BL.2.1 | ||||||||
Other_sequence (137) | |||||||||
Associated_feature | WBsf643126 | ||||||||
WBsf656099 | |||||||||
WBsf656100 | |||||||||
WBsf217359 | |||||||||
Experimental_info | RNAi_result (20) | ||||||||
Expr_pattern | Expr1012250 | ||||||||
Expr1030368 | |||||||||
Expr1160791 | |||||||||
Expr2010401 | |||||||||
Expr2028643 | |||||||||
Microarray_results (20) | |||||||||
Expression_cluster (288) | |||||||||
Interaction (16) | |||||||||
Map_info | Map | I | Position | -5.09771 | Error | 0.064213 | |||
Positive | Positive_clone | Y54E10BL | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00061662 | |||||||||
WBPaper00064788 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |