WormBase Tree Display for Gene: WBGene00000616

WBGene00000616 SMap: S_parent: Sequence: C09G5
  Identity: Version: 1
    Name: CGC_name: col-39 Person_evidence: WBPerson345
      Sequence_name: C09G5.4
      Molecular_name: C09G5.4
        C09G5.4.1
        CE01484
      Other_name: CELE_C09G5.4 Accession_evidence: NDB BX284602
      Public_name: col-39
    DB_info: Database: AceView gene 2K995
        WormQTL gene WBGene00000616
        WormFlux gene WBGene00000616
        NDB locus_tag CELE_C09G5.4
        Panther gene CAEEL|WormBase=WBGene00000616|UniProtKB=Q09455
          family PTHR24637
        NCBI gene 174651
        RefSeq protein NM_063908.7
        SwissProt UniProtAcc Q09455
        TREEFAM TREEFAM_ID TF316783
        UniProt_GCRP UniProtAcc Q09455
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (18)
    Legacy_information: [C.elegansII] NMK. Encodes collagen, col-8 family. [Kramer 1994; CH]
    RNASeq_FPKM (74)
    GO_annotation: 00055987
      00055988
      00111693
    Ortholog (16)
    Paralog (171)
    Structured_description: Concise_description: col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35. Paper_evidence: WBPaper00000748
            WBPaper00001918
            WBPaper00005654
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
            WBPaper00067038
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS296 version of WormBase
          Date_last_updated: 20 Mar 2025 00:00:00
  Molecular_info: Corresponding_CDS: C09G5.4
    Corresponding_transcript: C09G5.4.1
    Other_sequence (17)
    Associated_feature: WBsf644627
      WBsf222052
  Experimental_info: RNAi_result: WBRNAi00010549 Inferred_automatically: RNAi_primary
      WBRNAi00028737 Inferred_automatically: RNAi_primary
      WBRNAi00040236 Inferred_automatically: RNAi_primary
      WBRNAi00028739 Inferred_automatically: RNAi_primary
      WBRNAi00040235 Inferred_automatically: RNAi_primary
      WBRNAi00072831 Inferred_automatically: RNAi_primary
      WBRNAi00072830 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024515
      Expr1030361
      Expr1144308
      Expr2010391
      Expr2028633
    Drives_construct: WBCnstr00037423
    Construct_product: WBCnstr00037423
    Microarray_results (17)
    Expression_cluster (323)
    Interaction (77)
  Map_info: Map: II Position: 3.12389 Error: 3.9e-05
    Positive: Positive_clone: C09G5 Inferred_automatically: From sequence, transcript, pseudogene data
        GS#144A5
    Pseudo_map_position
  Reference: WBPaper00001918
    WBPaper00006387
    WBPaper00012573
    WBPaper00032165
    WBPaper00038491
    WBPaper00055090
    WBPaper00066610
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene