WormBase Tree Display for Gene: WBGene00000598
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| WBGene00000598 | SMap | S_parent | Sequence | F54B11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-9 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F54B11.1 | ||||||||
| Molecular_name | F54B11.1 | ||||||||
| F54B11.1.1 | |||||||||
| CE05925 | |||||||||
| Other_name | CELE_F54B11.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | col-9 | ||||||||
| DB_info | Database | AceView | gene | XO209 | |||||
| WormQTL | gene | WBGene00000598 | |||||||
| WormFlux | gene | WBGene00000598 | |||||||
| NDB | locus_tag | CELE_F54B11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000598|UniProtKB=Q20744 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 186210 | |||||||
| RefSeq | protein | NM_077872.1 | |||||||
| TrEMBL | UniProtAcc | Q20744 | |||||||
| UniProt_GCRP | UniProtAcc | Q20744 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (34) | |||||||||
| Legacy_information | [C.elegansII] NMK. Hybridizes to collagen probe. [Cox et al. 1985] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00065484 | ||||||||
| 00065485 | |||||||||
| 00102385 | |||||||||
| Ortholog (28) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-9 encodes a collagen protein. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54B11.1 | |||||||
| Corresponding_transcript | F54B11.1.1 | ||||||||
| Other_sequence | OOC01204_1 | ||||||||
| AA294207.1 | |||||||||
| FK802410.1 | |||||||||
| FG353075.1 | |||||||||
| AA901488.1 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032733 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015562 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048216 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015828 | ||||||||
| Expr1152022 | |||||||||
| Expr2010447 | |||||||||
| Expr2028687 | |||||||||
| Drives_construct | WBCnstr00037437 | ||||||||
| Construct_product | WBCnstr00037437 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (29) | |||||||||
| SAGE_tag | SAGE:gatggaggag | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:gatggaggagtattttt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | X | Position | 13.7739 | |||||
| Positive | Positive_clone | F54B11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| IICOL9 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00000751 | ||||||||
| WBPaper00006387 | |||||||||
| WBPaper00013989 | |||||||||
| WBPaper00015271 | |||||||||
| Remark | Map X | ||||||||
| [according to Jim Kramer, col-9 is either of F54B11.1 and .2. So it might as well be .1, and .2 will be an adjacent unnamed collagen] email JAH 0109 | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
