WormBase Tree Display for Gene: WBGene00000593
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WBGene00000593 | SMap | S_parent | Sequence | W01B6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | col-2 | Person_evidence | WBPerson345 | |||||
Sequence_name | W01B6.7 | ||||||||
Molecular_name | W01B6.7 | ||||||||
W01B6.7.1 | |||||||||
CE03759 | |||||||||
Other_name | CELE_W01B6.7 | Accession_evidence | NDB | BX284604 | |||||
Public_name | col-2 | ||||||||
DB_info | Database | AceView | gene | 4K848 | |||||
WormQTL | gene | WBGene00000593 | |||||||
WormFlux | gene | WBGene00000593 | |||||||
NDB | locus_tag | CELE_W01B6.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000593|UniProtKB=P17656 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 177872 | |||||||
RefSeq | protein | NM_069428.4 | |||||||
SwissProt | UniProtAcc | P17656 | |||||||
UniProt_GCRP | UniProtAcc | P17656 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (22) | |||||||||
Legacy_information | Transcript present in dauer larvae. | ||||||||
[C.elegansII] NMK. Transcript abundant only in dauer larvae. Encodes 300 aa collagen, dpy-13 family (59%identical to SQT-3). [Kramer et al. 1982; Cox and Hirsh 1985] | |||||||||
Strain | WBStrain00055316 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00037557 | ||||||||
00037558 | |||||||||
00102381 | |||||||||
Ortholog (14) | |||||||||
Paralog (163) | |||||||||
Structured_description | Concise_description | col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals. | Paper_evidence (2) | ||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 01 Sep 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Modifies_disease | DOID:10652 | ||||||||
Modifies_disease_in_annotation | WBDOannot00001516 | ||||||||
Molecular_info | Corresponding_CDS | W01B6.7 | |||||||
Corresponding_transcript | W01B6.7.1 | ||||||||
Other_sequence (53) | |||||||||
Associated_feature | WBsf230664 | ||||||||
Experimental_info | RNAi_result | WBRNAi00019454 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054508 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027595 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr610 | ||||||||
Expr761 | |||||||||
Expr1026718 | |||||||||
Expr1030348 | |||||||||
Expr1158055 | |||||||||
Expr2010384 | |||||||||
Expr2028626 | |||||||||
Drives_construct | WBCnstr00037441 | ||||||||
Construct_product | WBCnstr00037441 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (126) | |||||||||
Interaction (54) | |||||||||
Map_info | Map | IV | Position | 4.48372 | Error | 0.002237 | |||
Positive | Positive_clone | DH#CG7 | |||||||
W01B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 1645 | |||||||
1649 | |||||||||
1653 | |||||||||
1654 | |||||||||
1882 | |||||||||
4260 | |||||||||
Reference (43) | |||||||||
Method | Gene |