WormBase Tree Display for Gene: WBGene00000459
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| WBGene00000459 | SMap | S_parent | Sequence | F22D3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ceh-38 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F22D3.1 | ||||||||
| Molecular_name (56) | |||||||||
| Other_name | CELE_F22D3.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ceh-38 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (55) | |||||||||
| Legacy_information | [Burglin,01/98/] ONECUT homeobox gene. | ||||||||
| Strain | WBStrain00034791 | ||||||||
| WBStrain00051864 | |||||||||
| WBStrain00055018 | |||||||||
| WBStrain00055004 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00000444 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000460 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000464 | |||||||||
| WBGene00017538 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ceh-38 encodes two proteins, by alternative splicing, that belong to the ONECUT class of homeodomain proteins (which includes mammalian hepatocyte nuclear factor-6); ceh-38 is expressed from embryos to adults, and in many different tissues (e.g., pharynx, gut, hypodermis and many nerve cells). | Paper_evidence | WBPaper00003098 | |||||
| WBPaper00003249 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 28 Mar 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including body wall musculature; excretory cell; intestine; neurons; and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS (16) | ||||||||
| Corresponding_transcript (24) | |||||||||
| Other_sequence (45) | |||||||||
| Associated_feature | WBsf644340 | ||||||||
| WBsf976458 | |||||||||
| WBsf976459 | |||||||||
| WBsf976460 | |||||||||
| WBsf978507 | |||||||||
| WBsf988309 | |||||||||
| WBsf988310 | |||||||||
| WBsf1012465 | |||||||||
| Gene_product_binds (369) | |||||||||
| Transcription_factor | WBTranscriptionFactor000335 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00045305 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00084577 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008194 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031264 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr604 | ||||||||
| Expr7517 | |||||||||
| Expr7900 | |||||||||
| Expr15586 | |||||||||
| Expr1013463 | |||||||||
| Expr1030263 | |||||||||
| Expr1149229 | |||||||||
| Expr1200380 | |||||||||
| Expr2009882 | |||||||||
| Expr2028122 | |||||||||
| Drives_construct | WBCnstr00012444 | ||||||||
| WBCnstr00012662 | |||||||||
| WBCnstr00012977 | |||||||||
| WBCnstr00037521 | |||||||||
| Construct_product | WBCnstr00037521 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction (52) | |||||||||
| Map_info | Map | II | Position | 0.147483 | Error | 0.001722 | |||
| Positive | Positive_clone | F22D3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
