WormBase Tree Display for Gene: WBGene00000158
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WBGene00000158 | SMap | S_parent | Sequence | Y105E8A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | apg-1 | Person_evidence | WBPerson360 | |||||
WBPerson567 | |||||||||
Sequence_name | Y105E8A.9 | ||||||||
Molecular_name | Y105E8A.9 | ||||||||
Y105E8A.9.1 | |||||||||
CE29847 | |||||||||
Other_name | apt-1 | Person_evidence | WBPerson625 | ||||||
Y105E8E.j | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y105E8E.k | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y105E8A.9 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | apg-1 | ||||||||
DB_info | Database | AceView | gene | 1P9 | |||||
WormQTL | gene | WBGene00000158 | |||||||
WormFlux | gene | WBGene00000158 | |||||||
NDB | locus_tag | CELE_Y105E8A.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000158|UniProtKB=Q8WQB3 | |||||||
family | PTHR22780 | ||||||||
NCBI | gene | 173304 | |||||||
RefSeq | protein | NM_170941.8 | |||||||
TREEFAM | TREEFAM_ID | TF300367 | |||||||
TrEMBL | UniProtAcc | Q8WQB3 | |||||||
UniProt_GCRP | UniProtAcc | Q8WQB3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | apg-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | apg | ||||||||
Allele (223) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Contained_in_operon | CEOP1904 | ||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00000161 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | apg-1 encodes an adaptin: specifically, it encodes an ortholog of the gamma subunit of adaptor protein complex 1 (AP-1). | Paper_evidence | WBPaper00004907 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 16 Jul 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable clathrin adaptor activity and clathrin binding activity. Involved in apical protein localization and protein secretion. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of AP-1 adaptor complex. Is an ortholog of human AP1G1 (adaptor related protein complex 1 subunit gamma 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y105E8A.9 | |||||||
Corresponding_transcript | Y105E8A.9.1 | ||||||||
Other_sequence (82) | |||||||||
Associated_feature | WBsf643841 | ||||||||
WBsf643842 | |||||||||
WBsf657094 | |||||||||
WBsf986154 | |||||||||
WBsf986155 | |||||||||
WBsf218792 | |||||||||
WBsf218793 | |||||||||
WBsf218794 | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern | Expr1011449 | ||||||||
Expr1030087 | |||||||||
Expr1158774 | |||||||||
Expr2009357 | |||||||||
Expr2027593 | |||||||||
Microarray_results (22) | |||||||||
Expression_cluster (95) | |||||||||
Interaction (29) | |||||||||
Map_info | Map | I | Position | 25.6856 | Error | 0.247972 | |||
Positive | Positive_clone | Y105E8A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5315 | |||||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |