WormBase Tree Display for Gene: WBGene00000023
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| WBGene00000023 | Evidence | Person_evidence | WBPerson583 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson36 | |||||||||
| SMap | S_parent | Sequence | Y53C10A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | abt-5 | Person_evidence | WBPerson36 | |||||
| Sequence_name | Y53C10A.9 | ||||||||
| Molecular_name | Y53C10A.9 | ||||||||
| Y53C10A.9.1 | |||||||||
| CE54016 | |||||||||
| Other_name | CELE_Y53C10A.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | abt-5 | ||||||||
| DB_info | Database (9) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abt | ||||||||
| Allele (143) | |||||||||
| Strain | WBStrain00001136 | ||||||||
| WBStrain00002052 | |||||||||
| WBStrain00032456 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00000019 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000020 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000021 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00000022 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000421 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | abt-5 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCA subfamily of transport proteins; ABT-5 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of abt-5 activity via RNAi results in no obvious defects, the precise role of abt-5 in C. elegans development and/or behavior is not yet known; abt-5 promoter-gfp fusion proteins are expressed in larvae and adults in the intestine and in unidentified cells in the head. | Paper_evidence | WBPaper00006421 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00024561 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 06 Mar 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in intracellular membrane-bounded organelle. Expressed in head. Is an ortholog of human ABCA10 (ATP binding cassette subfamily A member 10). | Paper_evidence | WBPaper00065943 | ||||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53C10A.9 | |||||||
| Corresponding_CDS_history | Y53C10A.9:wp274 | ||||||||
| Corresponding_transcript | Y53C10A.9.1 | ||||||||
| Other_sequence | JI164292.1 | ||||||||
| Oden_isotig24563 | |||||||||
| FG587459.1 | |||||||||
| Oden_isotig24013 | |||||||||
| Associated_feature | WBsf985447 | ||||||||
| WBsf1010824 | |||||||||
| WBsf1010825 | |||||||||
| WBsf218574 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000515 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004714 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057249 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram592 | ||||||||
| Expr3319 | |||||||||
| Expr7032 | |||||||||
| Expr7033 | |||||||||
| Expr1026989 | |||||||||
| Expr1160682 | |||||||||
| Expr2009097 | |||||||||
| Expr2027333 | |||||||||
| Drives_construct | WBCnstr00002032 | ||||||||
| WBCnstr00002836 | |||||||||
| WBCnstr00011315 | |||||||||
| WBCnstr00037790 | |||||||||
| Construct_product | WBCnstr00037790 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (193) | |||||||||
| Interaction (39) | |||||||||
| Map_info | Map | I | Position | 13.0215 | Error | 0.000514 | |||
| Positive | Positive_clone | Y53C10A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006421 | ||||||||
| WBPaper00031484 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
