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WormBase Tree Display for Gene: WBGene00006379

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Name Class

WBGene00006379SMapS_parentSequenceT23D8
IdentityVersion2
NameCGC_namesys-1Person_evidenceWBPerson320
Sequence_nameT23D8.9
Molecular_nameT23D8.9a
T23D8.9a.1
CE18959
T23D8.9b
CE27209
T23D8.9c
CE50477
T23D8.9b.1
T23D8.9c.1
Other_nameCELE_T23D8.9Accession_evidenceNDBBX284601
Public_namesys-1
DB_infoDatabaseAceViewgene1K556
WormQTLgeneWBGene00006379
SignaLinkproteinWBGene00006379
WormFluxgeneWBGene00006379
NDBlocus_tagCELE_T23D8.9
NCBIgene172859
RefSeqproteinNM_060238.6
NM_001392922.1
NM_001313509.3
SwissProtUniProtAccQ9XVI2
UniProt_GCRPUniProtAccQ9XVI2
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:40WBPerson1971EventImportedInitial conversion from geneace
226 Jul 2005 13:20:15WBPerson2970EventAcquires_mergeWBGene00011946
Acquires_mergeWBGene00011946
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsys
Allele (61)
StrainWBStrain00022575
WBStrain00022587
WBStrain00022589
WBStrain00022617
WBStrain00022636
RNASeq_FPKM (74)
GO_annotation (47)
Ortholog (22)
Structured_descriptionConcise_descriptionsys-1 encodes a novel protein that contains three divergent armadillo repeats; during gonadogenesis, SYS-1 functions in a Wnt/MAPK signaling pathway as a dosage-dependent beta-catenin-like transcriptional coactivator required for specification of distal cell fates; consistent with its role as a beta-catenin, SYS-1 interacts, in yeast two-hybrid and coimmunoprecipitation assays, with the POP-1/TCF transcription factor with which it can stimulate transcription via TCF binding sites; in two hybrid-assays, the POP-1/SYS-1 interaction requires the N-terminal beta-catenin binding domain of POP-1, and most of the SYS-1 protein; a VNS::SYS-1 reporter fusion protein is expressed in several tissues during embryonic and larval development and localizes to both the nucleus and cytoplasm as well as to what appears to be the centrosomes; in many tissues, SYS-1 is distributed asymmetrically, in a manner reciprocal to the asymmetric distribution of POP-1.Paper_evidenceWBPaper00004521
WBPaper00006440
WBPaper00026603
WBPaper00029120
Curator_confirmedWBPerson567
WBPerson1843
Date_last_updated09 Oct 2007 00:00:00
Automated_descriptionEnables RNA polymerase II-specific DNA-binding transcription factor binding activity; scaffold protein binding activity; and transcription coactivator activity. Involved in several processes, including cell fate commitment involved in formation of primary germ layer; gonad development; and regulation of gene expression. Located in several cellular components, including cell cortex; kinetochore; and pericentriolar material. Expressed in several structures, including ABplpapaap; ABprpapaap; Z1.aa; posterior distal tip cell; and tail hypodermis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDST23D8.9a
T23D8.9b
T23D8.9c
Corresponding_CDS_historyT23D8.9:wp47
Corresponding_transcriptT23D8.9a.1
T23D8.9b.1
T23D8.9c.1
Other_sequenceCJC02991_1
CRC06656_1
Associated_featureWBsf649538
WBsf649539
WBsf663824
WBsf664813
WBsf664814
WBsf664815
WBsf984874
WBsf1010464
WBsf220181
WBsf220182
Experimental_infoRNAi_resultWBRNAi00101240Inferred_automaticallyRNAi_primary
WBRNAi00098963Inferred_automaticallyRNAi_primary
WBRNAi00083476Inferred_automaticallyRNAi_primary
WBRNAi00101461Inferred_automaticallyRNAi_primary
WBRNAi00098833Inferred_automaticallyRNAi_primary
WBRNAi00087874Inferred_automaticallyRNAi_primary
WBRNAi00101314Inferred_automaticallyRNAi_primary
WBRNAi00026377Inferred_automaticallyRNAi_primary
WBRNAi00101680Inferred_automaticallyRNAi_primary
WBRNAi00098983Inferred_automaticallyRNAi_primary
WBRNAi00101621Inferred_automaticallyRNAi_primary
WBRNAi00113627Inferred_automaticallyRNAi_primary
WBRNAi00101806Inferred_automaticallyRNAi_primary
WBRNAi00081385Inferred_automaticallyRNAi_primary
WBRNAi00000105Inferred_automaticallyRNAi_primary
WBRNAi00083472Inferred_automaticallyRNAi_primary
WBRNAi00101654Inferred_automaticallyRNAi_primary
WBRNAi00101297Inferred_automaticallyRNAi_primary
WBRNAi00101538Inferred_automaticallyRNAi_primary
WBRNAi00101259Inferred_automaticallyRNAi_primary
WBRNAi00114722Inferred_automaticallyRNAi_primary
WBRNAi00100662Inferred_automaticallyRNAi_primary
WBRNAi00101311Inferred_automaticallyRNAi_primary
WBRNAi00101855Inferred_automaticallyRNAi_primary
WBRNAi00026372Inferred_automaticallyRNAi_primary
WBRNAi00098977Inferred_automaticallyRNAi_primary
WBRNAi00101552Inferred_automaticallyRNAi_primary
WBRNAi00084172Inferred_automaticallyRNAi_primary
WBRNAi00101672Inferred_automaticallyRNAi_primary
WBRNAi00101798Inferred_automaticallyRNAi_primary
WBRNAi00101526Inferred_automaticallyRNAi_primary
WBRNAi00101278Inferred_automaticallyRNAi_primary
WBRNAi00083470Inferred_automaticallyRNAi_primary
WBRNAi00101614Inferred_automaticallyRNAi_primary
WBRNAi00098976Inferred_automaticallyRNAi_primary
WBRNAi00098993Inferred_automaticallyRNAi_primary
WBRNAi00100101Inferred_automaticallyRNAi_primary
WBRNAi00099947Inferred_automaticallyRNAi_primary
WBRNAi00101805Inferred_automaticallyRNAi_primary
WBRNAi00101313Inferred_automaticallyRNAi_primary
WBRNAi00026378Inferred_automaticallyRNAi_primary
WBRNAi00113989Inferred_automaticallyRNAi_primary
WBRNAi00101135Inferred_automaticallyRNAi_primary
WBRNAi00101807Inferred_automaticallyRNAi_primary
WBRNAi00100849Inferred_automaticallyRNAi_primary
WBRNAi00101315Inferred_automaticallyRNAi_primary
WBRNAi00101634Inferred_automaticallyRNAi_primary
WBRNAi00094022Inferred_automaticallyRNAi_primary
WBRNAi00083477Inferred_automaticallyRNAi_primary
WBRNAi00061299Inferred_automaticallyRNAi_primary
WBRNAi00098953Inferred_automaticallyRNAi_primary
WBRNAi00101842Inferred_automaticallyRNAi_primary
WBRNAi00098920Inferred_automaticallyRNAi_primary
WBRNAi00101550Inferred_automaticallyRNAi_primary
WBRNAi00101298Inferred_automaticallyRNAi_primary
WBRNAi00099341Inferred_automaticallyRNAi_primary
WBRNAi00101548Inferred_automaticallyRNAi_primary
WBRNAi00101036Inferred_automaticallyRNAi_primary
WBRNAi00100288Inferred_automaticallyRNAi_primary
WBRNAi00083475Inferred_automaticallyRNAi_primary
WBRNAi00081384Inferred_automaticallyRNAi_primary
WBRNAi00101644Inferred_automaticallyRNAi_primary
WBRNAi00101470Inferred_automaticallyRNAi_primary
WBRNAi00101312Inferred_automaticallyRNAi_primary
WBRNAi00098971Inferred_automaticallyRNAi_primary
WBRNAi00101546Inferred_automaticallyRNAi_primary
WBRNAi00101316Inferred_automaticallyRNAi_primary
WBRNAi00101795Inferred_automaticallyRNAi_primary
WBRNAi00101309Inferred_automaticallyRNAi_primary
WBRNAi00101497Inferred_automaticallyRNAi_primary
WBRNAi00101202Inferred_automaticallyRNAi_primary
WBRNAi00101310Inferred_automaticallyRNAi_primary
WBRNAi00099745Inferred_automaticallyRNAi_primary
WBRNAi00053926Inferred_automaticallyRNAi_primary
WBRNAi00026371Inferred_automaticallyRNAi_primary
WBRNAi00000103Inferred_automaticallyRNAi_primary
WBRNAi00087871Inferred_automaticallyRNAi_primary
WBRNAi00098835Inferred_automaticallyRNAi_primary
WBRNAi00098962Inferred_automaticallyRNAi_primary
WBRNAi00101604Inferred_automaticallyRNAi_primary
WBRNAi00087713Inferred_automaticallyRNAi_primary
WBRNAi00098978Inferred_automaticallyRNAi_primary
WBRNAi00100475Inferred_automaticallyRNAi_primary
WBRNAi00099543Inferred_automaticallyRNAi_primary
WBRNAi00098973Inferred_automaticallyRNAi_primary
WBRNAi00099147Inferred_automaticallyRNAi_primary
Expr_pattern (12)
Drives_constructWBCnstr00001897
WBCnstr00001902
WBCnstr00001903
WBCnstr00001904
WBCnstr00008170
WBCnstr00019269
WBCnstr00019839
WBCnstr00034381
Construct_product (11)
AntibodyWBAntibody00000851
Microarray_results (36)
Expression_cluster (167)
Interaction (91)
WBProcessWBbiopr:00000073
WBbiopr:00000114
Map_infoMapIPosition4.13437Error0.001519
PositivePositive_cloneT23D8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5650
Pseudo_map_position
Reference (95)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene