WormBase Tree Display for Gene: WBGene00126544

WBGene00126544 SMap: S_parent: Sequence: Cjap.Contig16736
  Identity: Version: 3
    Name: CGC_name: Cjp-ire-1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA07340
      Molecular_name: CJA07340
        CJA07340.1
        JA68515
      Public_name: Cjp-ire-1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:21 WBPerson4055 Event: Imported: NGASP import
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        3 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cjp-ire-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ire
    RNASeq_FPKM: WBls:0000004 17.6381 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 11.6709 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 10.316 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        10.9261 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        9.70599 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 11.9398 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        14.6227 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        15.0811 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        22.2934 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        24.0392 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        24.3663 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        8.25976 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        8.87528 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        8.9353 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        9.25696 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
      WBls:0000101 10.9261 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        13.1223 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00187160
      00187161
      00187162
      00187163
      00187164
    Ortholog (32)
    Structured_description: Automated_description: Predicted to enable ATP binding activity; RNA nuclease activity; and protein kinase activity. Predicted to be involved in mRNA processing. Is an ortholog of C. elegans ire-1. In C. elegans, ire-1 is involved in nematode larval development; positive regulation of transcription by RNA polymerase II; and response to stress. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CJA07340
    Corresponding_CDS_history: CJA07340a:jp239
      CJA07340b:jp239
    Corresponding_transcript: CJA07340.1
    Other_sequence: Acan_isotig00118
      Acan_isotig00121
      Hbac_isotig05075
      JI465422.1
      Acan_isotig18044
      Acan_isotig00120
      Oden_isotig26078
      Acan_isotig00117
      Acan_isotig00119
      JI461676.1
      PP01394
      Acan_isotig00124
      MH07095
      PPC00347_1
      Oden_isotig19678
      JI175583.1
      JI170191.1
      Acan_isotig00123
      Oden_isotig26098
      AS14653
      MJ04535
      JI468635.1
      Acan_isotig00122
      MH08031
      Dviv_isotig29941
      AS11439
      JI235973.1
      Name_isotig03641
      JI165595.1
      Dviv_isotig27200
      PPC14362_1
      MJC04103_1
      GO239869.1
      JI483307.1
  Experimental_info: Expr_pattern: Expr1070685
      Expr1073040
    Microarray_results: GPL14145_CJA07340_1105-1164_0.890_11_C
      GPL14145_CJA07340_1178-1237_0.670_223_A
      GPL14145_CJA07340_1325-1384_0.796_83_B
      GPL14145_CJA10491_223-282_0.911_7_C
      GPL14145_CJA10491_362-421_0.912_6_A
      GPL14145_CJA10491_469-528_0.942_2_B
  Method: Gene