WormBase Tree Display for Gene: WBGene00113305

WBGene00113305 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 7
    Name: CGC_name: Ppa-lgc-4 From_analysis: Inferred_from_orthology
      Sequence_name: PPA23751
      Molecular_name: PPA23751
        PPA23751.1
        PP60186
      Other_name: GENEPREDICTION_SNAP300000080637
        GENEPREDICTION_SNAP300000080651
        GENEPREDICTION_SNAP300000080652
        UMM-S57-4.1 Person_evidence: WBPerson606
      Public_name: Ppa-lgc-4
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 24 Nov 2017 09:46:51 WBPerson4055 Event: Acquires_merge: WBGene00113319
        3 24 Nov 2017 09:46:51 WBPerson4055 Event: Acquires_merge: WBGene00113320
        4 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        5 08 May 2019 10:09:26 WBPerson1983 Name_change: CGC_name: Ppa-lgc-4
        6 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        7 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Ppa-lgc-4
      Acquires_merge: WBGene00113319
        WBGene00113320
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    RNASeq_FPKM: WBls:0000032 6.3356 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 1.06884 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
        2.46815 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
    GO_annotation: 00178782
      00178783
      00178784
      00178785
      00178786
      00178787
      00178788
    Ortholog (27)
    Paralog (120)
    Structured_description: Automated_description: Predicted to enable extracellular ligand-gated monoatomic ion channel activity; symporter activity; and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-4. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: PPA23751
    Corresponding_transcript: PPA23751.1
    Other_sequence: Oden_isotig14924
      BU087467.1
      NAC00840_1
      EX011608.1
      NB09832
      PT03774
      MI07046
      NAC01785_1
      HBC10246_1
      BU666101.1
      Oden_isotig29073
      ASC15817_1
      PTC03353_1
      DIC01464_1
      Tcol_isotig04240
      MIC06330_1
      CRC10281_1
      Dviv_isotig12120
      Acan_isotig13373
      HBC22382_1
      Oden_isotig23561
      AS14822
      Acan_isotig14467
      JI243537.1
      BMC04352_1
      DN152687.1
      Acan_isotig13169
      CJC03156_1
      Acan_isotig11426
      Tcol_isotig04241
      ES743875.1
      EX011797.1
      BU087543.1
      Dviv_isotig12119
      NBC01608_1
      Tcir_isotig12249
      DI02088
      FC547280.1
      Name_isotig06372
      HBC09918_1
      EX911242.1
      JI228166.1
      Tcol_isotig04239
      JI175936.1
  Experimental_info: Microarray_results (13)
  Remark: [190208 pad] The CGC name Ppa-lgc-4 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-lgc-4 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene