WormBase Tree Display for Gene: WBGene00026668

WBGene00026668 SMap: S_parent: Sequence: cb25.fpc0071c2
  Identity: Version: 3
    Name: CGC_name: Cbr-rpl-7 From_analysis: Inferred_from_orthology
      Sequence_name: CBG03905
      Molecular_name: CBG03905
        CBG03905.1
        CBP35110
      Other_name: CBG_03905 Accession_evidence: NDB HE600906
      Public_name: Cbr-rpl-7
    DB_info: Database: NDB locus_tag CBG_03905
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:56 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-rpl-7
        3 13 Nov 2007 14:01:54 WBPerson2970 Event: Acquires_merge: WBGene00000355
      Acquires_merge: WBGene00000355
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    RNASeq_FPKM: WBls:0000002 2070.32 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        2167.78 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        2242.26 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        2488.67 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        1704.19 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        2107.74 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        2119.05 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 448.821 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        487.97 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        527.118 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        500.784 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        526.412 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 1005.49 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        942.549 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        974.019 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        1005.82 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        983.423 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        985.727 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        991.355 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 1297.28 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1406.96 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        1857.73 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        627.145 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        1536.25 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1632.34 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        2253.16 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 2470.51 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 1976.32 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        2280.41 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        2323.5 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        2336.71 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        2366.58 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        2723.53 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 1560.4 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        1698.76 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        1708.69 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1718.63 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        1734.68 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        1960.92 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        1448.11 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        1709.12 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        1867.92 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 1581.09 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1618.77 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1621.82 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1642.65 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        1908.19 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        3076.62 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        1632.23 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        1928.64 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        2030.88 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 1857.73 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        1878 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        1711.41 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        1770.35 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00124985
      00124986
      00124987
    Ortholog (31)
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of C. elegans rpl-7. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CBG03905
    Corresponding_CDS_history: CBG03905:bp194
    Corresponding_transcript: CBG03905.1
    Other_sequence: AS17986
      OFC00700_1
      BMC12331_1
      ES411802.1
      ES409022.1
      AA901443.1
      EX911972.1
      EX913378.1
      ES744362.1
      EX910431.1
      WBC01225_1
      EX913212.1
      CJC11014_1
      GU130134.1
      FE906985.1
      PTC03185_1
      PTC00073_1
      EX915986.1
      ES564859.1
      EX011111.1
      TM01390
      CRC04878_1
      ES740287.1
      XIC00156_1
      EX559852.1
      AI253473.1
      CJC16549_1
      AS17765
      Acan_isotig07178
      CBC00109_2
      CK855095.1
      GR20001
      PT00620
      RS06182
      FE916724.1
      BU087289.1
      Dviv_isotig08933
      Dviv_isotig08934
      AW739442.1
      SS01446
      CR11759
      MAC00911_1
      Tcol_isotig20196
      ES412965.1
      HG10288
      GPC02732_1
      GR17174
      PTC04062_1
      GR978708.1
      PVC00961_1
      ES412359.1
      ES411112.1
      MIC05302_1
      JI175996.1
      PTC00149_1
      HG12052
      ES741807.1
      DI00988
      GR17213
      EW742171.1
      CR08775
      HG10488
      PT00801
      FD516030.1
      EX014519.1
      CR12202
      PPC00377_1
      ES744072.1
      PE00412
      BM00759
      GR11928
      SRC09456_1
      EX010248.1
      ZPC00017_1
      PPC13229_1
      ES740403.1
      HGC00843_2
      CN478075.1
      ES743739.1
      PT00037
      AA294138.1
      FK803900.1
      MJ00108
      Tcir_isotig11073
      MP00579
      ES744115.1
      EX011148.1
      FC814903.1
      CBC00109_3
      EX007914.1
      EX562887.1
      HGC00843_1
      EX008495.1
      GO249190.1
      WBC02382_1
      ES739725.1
      MCC05743_1
      FC820131.1
      AW682848.1
      NB07598
      HGC08724_1
      EX007404.1
      GW412203.1
      CR09783
      EX911990.1
      MI00410
      PTC00362_1
      CR09308
      ACC11055_1
      EX009915.1
      Tcir_isotig18787
      OF01013
      BU585515.1
      CR03292
      Tcir_isotig04933
      GR20002
      CR01872
      PT00416
      ES273178.1
      BE132576.1
      BMC00673_1
      CR02872
      ACC01648_2
      ES742902.1
      GO253096.1
      FC821654.1
      ES741833.1
      AI374043.1
      AE03218
      MJC00047_1
      NB06913
      ASC00122_1
      ES739915.1
      PT01738
      EX564115.1
      TMC01025_1
      JO473213.1
      CN478426.1
      JI180507.1
      BE491937.1
      ES411200.1
      FG588217.1
      ES411049.1
      ES740604.1
      EX915192.1
      EX012893.1
      CBC06075_1
      ES742850.1
      EX007552.1
      GRC05403_1
      AYC01875_1
      ES408687.1
      GR367753.1
      CN478425.1
      GR978156.1
      Name_isotig05663
      EX008719.1
      AS17925
      EX008972.1
      CBC00109_4
      FE908767.1
      EX007642.1
      PTC00102_1
      HC01665
      ES412607.1
      ES413487.1
      ALC00125_1
      DW718458.1
      GW406446.1
      MC00366
      Tcol_isotig10870
      DA00206
      EX910054.1
      ES561117.1
      BU585519.1
      GO249583.1
      Acan_isotig07105
      ES408865.1
      ES744349.1
      BE552495.1
      HBC19023_1
      HBC00005_1
      ES410329.1
      EX911368.1
      LSC00948_1
      MC00318
      RSC02457_1
      Acan_isotig13036
      EX011206.1
      ACC38397_1
      CJC00030_1
      BXC07187_1
      ZP00020
      NAC01672_1
      ES570428.1
      PT00592
      FC816379.1
      MCC01293_1
      JI172210.1
      ES564357.1
      EX011284.1
      PT01054
      Oden_isotig18129
      CBC16821_1
      ES567293.1
      EX566369.1
      MA02367
      PP00558
      DAC01828_1
      EX011509.1
      GR979214.1
      GP02234
      HG01189
      Tcir_isotig19622
      DN557974.1
      SRC00068_1
      JI477579.1
      PSC02547_1
      FC820785.1
      EX010587.1
      AI066939.1
      Tcir_isotig04934
      CRC01250_2
      ES413530.1
      EW742531.1
      EX916018.1
      HG10927
      Name_isotig01317
      CJC02995_1
      EW742463.1
      CRC09633_1
      CBC07864_1
      AW351400.1
      SR00994
      ES413001.1
      FC810922.1
      MHC02781_1
      CGC00315_1
      ACC01648_1
      EX912259.1
      SSC02056_1
      MAC01673_1
      ES409649.1
      EX006983.1
      FE915471.1
      EX914217.1
      NB07616
      GR15766
      CR00174
      FD516439.1
      CBC09883_1
      EX557899.1
      EX009319.1
      PSC01568_1
      FC815779.1
      BE720991.1
      ES410151.1
      FM207669.1
      EX558440.1
      EX502899.1
      GW410629.1
      BXC02998_1
      MJ00170
      Tcol_isotig10871
      EX912394.1
      XI01099
      AA294713.1
      JK315564.1
      OVC00399_1
      GRC00330_1
      EX911465.1
      EX014903.1
      CGC01065_1
      GR14411
      GR978466.1
      OVC06994_1
      Dviv_isotig08932
      CV200119.1
      BUC00079_1
      AE01098
      EX013648.1
      HBC28098_1
      SC00178
      FC814513.1
      FC821032.1
      CRC09266_1
      EX009222.1
      BU088143.1
      CBC00109_1
      AS03032
      MPC01637_1
      Tcol_isotig26131
      MI02217
      EX911816.1
      GR367678.1
      ES741206.1
      EX010200.1
      ES568845.1
      EX566392.1
      XI00073
      AI132737.1
      ES739808.1
      MIC01829_1
      GO250116.1
      ES410814.1
      CK850201.1
      SSC06029_1
      Hbac_isotig03299
      PPC20982_1
      FC820579.1
      CRC07594_1
      EX555215.1
      EX013194.1
      ES741024.1
      EX910292.1
      MA01606
      FE916625.1
      OOC00148_1
      HC02554
      Tcir_isotig17445
      HG03409
      HCC00791_1
      EX916420.1
      CSC00306_1
      EX915783.1
      EX562474.1
      ES414331.1
      CBC15287_1
      PT00372
      EX916152.1
      GR17173
      HCC11482_1
      ES560962.1
      FG584730.1
      ES560950.1
      AI444920.1
      PT01060
      CJC04426_1
      PTC00055_1
      EX010702.1
      EX910537.1
      ES743952.1
      EX911621.1
      EX914928.1
      GR977381.1
      EX914920.1
      AS04022
      CJC09018_1
      HC01872
      HGC00050_1
      EX008168.1
      ES569941.1
      PEC00341_1
      EX916669.1
      MH02024
      GR15767
      NBC01050_1
      EG025539.1
      ES413651.1
      EX011713.1
      EX911663.1
      TSC05780_1
      CD455757.1
      EX499784.1
      CK854927.1
      GR14367
      JK315857.1
  Experimental_info: Expr_pattern: Expr1056219
    Microarray_results: GPL8303_CB6_WBGene00026668_A
      GPL8303_CB6_WBGene00026668_B
      GPL14143_CBG03905_162-221_0.913_8_C
      GPL14143_CBG03905_255-314_0.932_4_B
      GPL14143_CBG03905_682-741_0.970_1_A
    Expression_cluster: WBPaper00051425:CB_L4_vs_embryo_upregulated
  Method: Gene