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WormBase Tree Display for Gene: WBGene00089965

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Name Class

WBGene00089965SMapS_parentSequencePPA_ChrI
IdentityVersion7
NameSequence_namePPA00411
Molecular_namePPA00411
PPA00411.1
PP71105
Other_nameGENEPREDICTION_SNAP300000057541
UMA-S57-42.27Person_evidenceWBPerson606
Public_namePPA00411
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:03WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_namePpa-smc-4
308 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:25WBPerson1983Name_changeCGC_namePpa-smc-4
501 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameRemoved
604 Feb 2020 15:43:56WBPerson1983Name_changeCGC_namePpa-smc-4
704 Jun 2020 14:38:22WBPerson1983Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000320.53825From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010.53825From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
0.603163From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
1.27124From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00167967
00167968
00167969
OrthologWBGene00001086Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
WBGene00004874Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
WBGene00037531Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00039202Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00209751Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00163962Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00191546Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00234061Brugia malayiFrom_analysisWormBase-Compara
WBGene00119446Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00136675Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00208945Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00239156Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g4439Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g4612Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5410Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g5880Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11955Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g20806Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21869Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g22290Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g14748Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16291Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g13870Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g22438Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1002Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g16477Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5472Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5778Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6519Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6625Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6626Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6627Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14541Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g729Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11994Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g13553Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g13893Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g22807Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29992Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3916Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1279Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g22044Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00523.g11845Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00624.g12916Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-dpy-27Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cni-smc-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold478.g1756Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold478.g1757Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10852Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10853Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00378.g10414Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00664.g14177Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04454.g32970Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14942Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010071Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04055Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g1000Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5387Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30070000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_30319900Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00061748Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00061749Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00071103Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00154846Caenorhabditis brenneriFrom_analysisWormBase-Compara
chrIII_pilon.g7320Caenorhabditis elegansFrom_analysisWormBase-Compara
chrIII_pilon.g7484Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00263197Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00265112Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00266948Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294874Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00098666Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00107491Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00109381Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00112336Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00114841Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00203907Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity. Predicted to be involved in chromosome organization. Predicted to be located in chromosome. Is an ortholog of C. elegans dpy-27 and smc-4. In C. elegans, dpy-27 is involved in dosage compensation by hypoactivation of X chromosome.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSPPA00411
Corresponding_transcriptPPA00411.1
Other_sequenceTcir_isotig02789
PPC14761_1
TVC01360_1
BXC07601_1
TV01530
Tcir_isotig02788
Experimental_infoMicroarray_results (12)
Expression_clusterWBPaper00041466:PP_germline-ablation_regulated
Remark[190208 pad] The CGC name Ppa-smc-4 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[191001 pad] The CGC name Ppa-smc-4 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[200603 pad] The CGC name Ppa-smc-4 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene