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WormBase Tree Display for Gene: WBGene00017386

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Name Class

WBGene00017386SMapS_parentSequenceF11G11
IdentityVersion2
NameCGC_namenspd-5Person_evidenceWBPerson1983
Sequence_nameF11G11.8
Molecular_nameF11G11.8
F11G11.8.1
CE02882
Other_nameCELE_F11G11.8Accession_evidenceNDBBX284602
Public_namenspd-5
DB_infoDatabaseAceViewgene2F150
WormQTLgeneWBGene00017386
WormFluxgeneWBGene00017386
NDBlocus_tagCELE_F11G11.8
PanthergeneCAEEL|WormBase=WBGene00017386|UniProtKB=G5EES8
familyPTHR35375
NCBIgene173837
RefSeqproteinNM_062474.6
TREEFAMTREEFAM_IDTF319437
TrEMBLUniProtAccG5EES8
UniProt_GCRPUniProtAccG5EES8
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:58WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
203 Oct 2006 09:54:23WBPerson2970Name_changeCGC_namenspd-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnspd
AlleleWBVar01499702
WBVar02151062
WBVar01498435
WBVar02074659
WBVar00364960
WBVar00364961
WBVar01499506
WBVar00728533
WBVar01499507
RNASeq_FPKM (74)
OrthologWBGene00158606Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00141340Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00162485Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00157609Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00154820Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00137025Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00206737Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00209397Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00132634Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00214546Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00127116Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00212157Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00129669Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00218217Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00134984Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00057463Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00057292Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00057476Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00056605Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00070580Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00061696Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00058098Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00063307Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00051079Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00027837Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037331Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037471Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039798Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CSP21.g13650Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g8999Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1026Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g11233Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g1574Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g8784Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19796Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g19809Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g4940Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11611Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g18488Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g3744Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g8802Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10189Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g16963Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18304Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g19427Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g21288Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g25927Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g4282Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g6652Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g954Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10573Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g10620Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g12081Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5804Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5908Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1422Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16779Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g20346Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g20347Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5982Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19813Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5708Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00071.g3405Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00392.g10200Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00978.g15206Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_15316.g24995Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g4453Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g4456Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g6835Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g7198Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g10155Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g18038Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold593.g5192Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11213Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13027Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17139Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19781Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00474.g11836Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04402Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05371Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05955Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05967Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_13089Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_21479Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_004089Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_005908Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_005922Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_006111Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_010015Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_011090Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_011095Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019213Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019920Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_023075Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_025061Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_026048Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_30061100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4346Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00010633Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012781Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016058Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017808Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00021280Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00022754Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00020860Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00020715Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00043147Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including AVK; amphid sheath cell; germ line; intestine; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including mut-16; nuo-6; and atx-3 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-eight chemicals including Ethanol; methylmercury hydroxide; and methylmercuric chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSF11G11.8
Corresponding_transcriptF11G11.8.1
Other_sequenceCJC05614_1
CJC00637_3
CR02183
CJC00637_1
FG621263.1
CJC00550_2
CJC04830_1
CRC01200_2
CJC00760_2
Associated_featureWBsf222962
Experimental_infoRNAi_resultWBRNAi00019060Inferred_automaticallyRNAi_primary
WBRNAi00007482Inferred_automaticallyRNAi_primary
WBRNAi00053901Inferred_automaticallyRNAi_primary
WBRNAi00030843Inferred_automaticallyRNAi_primary
WBRNAi00044415Inferred_automaticallyRNAi_primary
WBRNAi00013149Inferred_automaticallyRNAi_primary
WBRNAi00022595Inferred_automaticallyRNAi_primary
Expr_patternExpr1021422
Expr1148363
Expr2014482
Expr2032721
Drives_constructWBCnstr00027335
Construct_productWBCnstr00027335
Microarray_resultsSMD_F11G11.8
172546_x_at
Aff_F11G11.8
GPL8304_CE_WBGene00017386_A
GPL8673_F11G11_8P00002
GPL8673_F11G11_8P00069
Expression_cluster (209)
Interaction (140)
Map_infoMapIIPosition-2.98517Error0.001881
PositivePositive_cloneF11G11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene