WormBase Tree Display for Gene: WBGene00011267
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WBGene00011267 | SMap | S_parent | Sequence | R17 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxb-85 | Person_evidence | WBPerson655 | |||||
Sequence_name | R17.1 | ||||||||
Molecular_name | R17.1 | ||||||||
R17.1.1 | |||||||||
CE16314 | |||||||||
Other_name | CELE_R17.1 | Accession_evidence | NDB | BX284603 | |||||
Public_name | fbxb-85 | ||||||||
DB_info | Database | AceView | gene | 3L936 | |||||
WormQTL | gene | WBGene00011267 | |||||||
WormFlux | gene | WBGene00011267 | |||||||
NDB | locus_tag | CELE_R17.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011267|UniProtKB=O18004 | |||||||
family | PTHR22899 | ||||||||
NCBI | gene | 187876 | |||||||
RefSeq | protein | NM_066988.3 | |||||||
TrEMBL | UniProtAcc | O18004 | |||||||
UniProt_GCRP | UniProtAcc | O18004 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 12 Dec 2005 17:22:20 | WBPerson2970 | Name_change | CGC_name | fbxb-85 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxb | ||||||||
Allele (24) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (47) | |||||||||
Paralog (144) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABplaapaaa; ABplapaaaap; ABplapaaapa; NSM; and interneuron based on tiling array and single-cell RNA-seq studies. Is affected by several genes including swsn-1; mut-2; and ztf-11 based on tiling array; RNA-seq; and microarray studies. Is affected by twelve chemicals including Mercuric Chloride; rotenone; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box associated; F-box associated domain, type 2; and F-box domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R17.1 | |||||||
Corresponding_transcript | R17.1.1 | ||||||||
Associated_feature | WBsf651488 | ||||||||
WBsf655482 | |||||||||
WBsf227529 | |||||||||
WBsf227530 | |||||||||
WBsf227531 | |||||||||
WBsf227532 | |||||||||
Experimental_info | RNAi_result | WBRNAi00034951 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006324 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00052002 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017886 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1025146 | ||||||||
Expr1034946 | |||||||||
Expr1155644 | |||||||||
Expr2011686 | |||||||||
Expr2029925 | |||||||||
Microarray_results | SMD_R17.1 | ||||||||
177230_at | |||||||||
A_12_P100613 | |||||||||
Aff_R17.1 | |||||||||
GPL13394_WBGene00011267 | |||||||||
GPL13914_R17.1 | |||||||||
GPL14144_R17.1_772-831_0.972_1_A | |||||||||
GPL19516_CGZ0032358 | |||||||||
GPL21109_R17.1 | |||||||||
GPL3518_CE16314 | |||||||||
GPL8304_CE_WBGene00011267_A | |||||||||
GPL8304_CE_WBGene00011267_C | |||||||||
GPL8673_R17_1P00327 | |||||||||
GPL8673_R17_1P00418 | |||||||||
GPL8673_R17_1P00759 | |||||||||
GPL9450_R17.1 | |||||||||
cea2.i.20668 | |||||||||
Expression_cluster (113) | |||||||||
Interaction (41) | |||||||||
Map_info | Map | III | Position | 5.42989 | Error | 0.006803 | |||
Positive | Positive_clone | R17 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |