WormBase Tree Display for Gene: WBGene00010051
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WBGene00010051 | SMap | S_parent | Sequence | F54D5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F54D5.5 | |||||||
Molecular_name | F54D5.5a | ||||||||
F54D5.5a.1 | |||||||||
CE36386 | |||||||||
F54D5.5b | |||||||||
CE37920 | |||||||||
F54D5.5a.2 | |||||||||
F54D5.5b.1 | |||||||||
Other_name | CELE_F54D5.5 | Accession_evidence | NDB | BX284602 | |||||
Public_name | F54D5.5 | ||||||||
DB_info | Database | AceView | gene | 2L856 | |||||
WormQTL | gene | WBGene00010051 | |||||||
WormFlux | gene | WBGene00010051 | |||||||
NDB | locus_tag | CELE_F54D5.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00010051|UniProtKB=Q5FC73 | |||||||
family | PTHR37960 | ||||||||
NCBI | gene | 174771 | |||||||
RefSeq | protein | NM_001393197.1 | |||||||
NM_001027032.5 | |||||||||
TREEFAM | TREEFAM_ID | TF316201 | |||||||
TrEMBL | UniProtAcc | Q20771 | |||||||
Q5FC73 | |||||||||
UniProt_GCRP | UniProtAcc | Q5FC73 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (42) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (20) | |||||||||
Paralog | WBGene00008578 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00015899 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00045357 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
Structured_description | Automated_description | Enriched in several structures, including ABalappaap; ABalpapaap; ciliated neurons; germ line; and pharyngeal cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including cyc-1; swsn-1; and puf-8 based on microarray and RNA-seq studies. Is affected by thirteen chemicals including Tunicamycin; Cry5B; and glycine based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F54D5.5a | |||||||
F54D5.5b | |||||||||
Corresponding_CDS_history | F54D5.5:wp57 | ||||||||
F54D5.5:wp119 | |||||||||
Corresponding_transcript | F54D5.5a.1 | ||||||||
F54D5.5a.2 | |||||||||
F54D5.5b.1 | |||||||||
Other_sequence | CJC10639_1 | ||||||||
CRC06771_1 | |||||||||
CBC04183_1 | |||||||||
CR03095 | |||||||||
Associated_feature (11) | |||||||||
Experimental_info | RNAi_result (24) | ||||||||
Expr_pattern | Expr1019054 | ||||||||
Expr1034382 | |||||||||
Expr1152117 | |||||||||
Expr2004155 | |||||||||
Expr2022379 | |||||||||
Drives_construct | WBCnstr00031706 | ||||||||
Construct_product | WBCnstr00031706 | ||||||||
Microarray_results | SMD_F54D5.5 | ||||||||
174285_s_at | |||||||||
179107_s_at | |||||||||
A_12_P109892 | |||||||||
A_12_P154290 | |||||||||
A_12_P154291 | |||||||||
GPL13394_WBGene00010051 | |||||||||
GPL13914_F54D5.5 | |||||||||
GPL14144_F54D5.5b_1194-1253_0.939_5_C | |||||||||
GPL14144_F54D5.5b_1296-1355_0.940_4_B | |||||||||
GPL14144_F54D5.5b_1401-1460_0.949_1_A | |||||||||
GPL19516_CGZ0023780 | |||||||||
GPL19516_CGZ0023781 | |||||||||
GPL21109_F54D5.5a | |||||||||
GPL3518_CE28564 | |||||||||
GPL8304_CE_WBGene00010051_A | |||||||||
GPL8673_F54D5_5aP00327 | |||||||||
GPL8673_F54D5_5aP00453 | |||||||||
GPL8673_F54D5_5aP01041 | |||||||||
GPL8673_F54D5_5bP00069 | |||||||||
GPL8673_F54D5_5bP00088 | |||||||||
GPL8673_F54D5_5bP00135 | |||||||||
GPL9450_F54D5.5 | |||||||||
cea2.p.40671 | |||||||||
Expression_cluster (196) | |||||||||
Interaction (121) | |||||||||
Map_info | Positive | Positive_clone | F54D5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | II | 3.76281 | |||||||
Reference | WBPaper00035598 | ||||||||
Method | Gene |