WormBase Tree Display for Gene: WBGene00004273
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WBGene00004273 | SMap | S_parent | Sequence | T23H2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | rab-10 | Paper_evidence | WBPaper00027018 | |||||
Person_evidence | WBPerson451 | ||||||||
Sequence_name | T23H2.5 | ||||||||
Molecular_name | T23H2.5 | ||||||||
T23H2.5.1 | |||||||||
CE14114 | |||||||||
Other_name | gum-1 | Person_evidence | WBPerson352 | ||||||
CELE_T23H2.5 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | rab-10 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 23 Mar 2006 16:37:22 | WBPerson2970 | Event | Acquires_merge | WBGene00001797 | ||||
Name_change | Other_name | gum-1 | |||||||
Acquires_merge | WBGene00001797 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rab | ||||||||
Allele (22) | |||||||||
Legacy_information | [C.elegansII] q373 : accumulates large, possibly aqueous vesicles in gut, leading to marbled appearance under Nomarski. OA2: dx2ts, oz162. [EJ] | ||||||||
Strain | WBStrain00033464 | ||||||||
WBStrain00033465 | |||||||||
WBStrain00036258 | |||||||||
WBStrain00004454 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (54) | |||||||||
Ortholog (42) | |||||||||
Paralog (32) | |||||||||
Structured_description | Concise_description | rab-10 encodes a Rab-like GTPase that is a member of the Ras superfamily of small GTPases; RAB-10 is required, upstream of RME-1, for basolateral endocytic recycling in the intestine, but not in oocytes or coelomocytes; RAB-10 is also required for GLR-1 receptor recycling in interneurons; a RAB-10::GFP fusion protein is widely expressed and in the intestine, localizes to early endosomes and the Golgi. | Paper_evidence | WBPaper00027018 | |||||
WBPaper00030925 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 29 Jun 2010 00:00:00 | ||||||||
Automated_description | Enables GTPase activating protein binding activity and ankyrin repeat binding activity. Involved in several processes, including negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process; receptor recycling; and vesicle-mediated transport. Located in several cellular components, including Golgi medial cisterna; cholinergic synapse; and cytoplasmic vesicle. Expressed in several structures, including PVD; coelomocyte; hermaphrodite gonad; hypodermis; and somatic nervous system. Is an ortholog of human RAB10 (RAB10, member RAS oncogene family). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T23H2.5 | |||||||
Corresponding_transcript | T23H2.5.1 | ||||||||
Other_sequence (78) | |||||||||
Associated_feature | WBsf976737 | ||||||||
WBsf976738 | |||||||||
WBsf976739 | |||||||||
WBsf976740 | |||||||||
WBsf976741 | |||||||||
WBsf976742 | |||||||||
WBsf976743 | |||||||||
WBsf219586 | |||||||||
WBsf219587 | |||||||||
Experimental_info | RNAi_result (41) | ||||||||
Expr_pattern | Expr3585 | ||||||||
Expr3825 | |||||||||
Expr8330 | |||||||||
Expr11666 | |||||||||
Expr12468 | |||||||||
Expr1020885 | |||||||||
Expr1032112 | |||||||||
Expr1157535 | |||||||||
Expr2015213 | |||||||||
Expr2033447 | |||||||||
Drives_construct | WBCnstr00001800 | ||||||||
WBCnstr00001804 | |||||||||
WBCnstr00007960 | |||||||||
WBCnstr00035595 | |||||||||
Construct_product (17) | |||||||||
Microarray_results | SMD_T23H2.5 | ||||||||
187873_s_at | |||||||||
A_12_P130151 | |||||||||
A_12_P130152 | |||||||||
A_12_P130153 | |||||||||
A_12_P130154 | |||||||||
A_12_P130155 | |||||||||
A_12_P152335 | |||||||||
Aff_T23H2.5 | |||||||||
GPL13394_WBGene00004273 | |||||||||
GPL13914_T23H2.5 | |||||||||
GPL14144_T23H2.5_196-255_0.925_6_C | |||||||||
GPL14144_T23H2.5_382-441_0.968_1_A | |||||||||
GPL14144_T23H2.5_450-509_0.931_5_B | |||||||||
GPL19516_CGZ0036498 | |||||||||
GPL21109_T23H2.5.1 | |||||||||
GPL3518_CE14114 | |||||||||
GPL8304_CE_WBGene00004273_A | |||||||||
GPL8673_T23H2_5P00452 | |||||||||
GPL8673_T23H2_5P00494 | |||||||||
GPL8673_T23H2_5P00524 | |||||||||
GPL9450_T23H2.5 | |||||||||
cea2.c.06316 | |||||||||
Expression_cluster (105) | |||||||||
Interaction (71) | |||||||||
Map_info | Map | I | Position | 1.11939 | |||||
Positive | Positive_clone | T23H2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5563 | |||||||
4681 | |||||||||
Pseudo_map_position | |||||||||
Reference (66) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
[200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (1.10072) | |||||||||
Method | Gene |