WormBase Tree Display for Gene: WBGene00003933
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| WBGene00003933 | SMap | S_parent | Sequence | T27B1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pat-9 | Paper_evidence | WBPaper00041122 | |||||
| Person_evidence | WBPerson1562 | ||||||||
| Sequence_name | T27B1.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | ztf-19 | Person_evidence | WBPerson1997 | ||||||
| CELE_T27B1.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | pat-9 | ||||||||
| DB_info | Database | WormFlux | gene | WBGene00003933 | |||||
| NDB | locus_tag | CELE_T27B1.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003933|UniProtKB=Q22829 | |||||||
| family | PTHR24381 | ||||||||
| NCBI | gene | 181714 | |||||||
| RefSeq | protein | NM_001395795.1 | |||||||
| NM_078279.7 | |||||||||
| NM_001395796.1 | |||||||||
| NM_001395794.1 | |||||||||
| SwissProt | UniProtAcc | Q22829 | |||||||
| TrEMBL | UniProtAcc | A0A8D9MJX7 | |||||||
| A0A8D9I7Y6 | |||||||||
| A0A8D9MHV7 | |||||||||
| UniProt_GCRP | UniProtAcc | Q22829 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 25 May 2012 15:26:41 | WBPerson2970 | Event | Acquires_merge | WBGene00020848 | ||||
| Name_change | Sequence_name | T27B1.2 | |||||||
| Other_name | ztf-19 | ||||||||
| Acquires_merge | WBGene00020848 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pat | ||||||||
| Allele (51) | |||||||||
| Legacy_information | [Williams BD] Severe Pat phenotype; some pharyngeal pumping. | ||||||||
| [C.elegansII] st558 : severe Pat phenotype; some pharyngeal pumping. [Williams and Waterston 1994; RW] | |||||||||
| Strain | WBStrain00033501 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00072740 | ||||||||
| 00072741 | |||||||||
| 00072742 | |||||||||
| 00072743 | |||||||||
| 00072744 | |||||||||
| 00072745 | |||||||||
| 00072746 | |||||||||
| 00072747 | |||||||||
| 00072748 | |||||||||
| 00072749 | |||||||||
| Ortholog (26) | |||||||||
| Structured_description | Automated_description | Predicted to enable chromatin insulator sequence binding activity. Involved in regulation of striated muscle cell differentiation. Located in nucleus. Expressed in body wall musculature and gonad. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T27B1.2a | |||||||
| T27B1.2b | |||||||||
| T27B1.2c | |||||||||
| T27B1.2d | |||||||||
| Corresponding_transcript | T27B1.2a.1 | ||||||||
| T27B1.2b.1 | |||||||||
| T27B1.2c.1 | |||||||||
| T27B1.2d.1 | |||||||||
| Other_sequence | JI461044.1 | ||||||||
| JI170232.1 | |||||||||
| BUC01144_1 | |||||||||
| JI478385.1 | |||||||||
| XI04992 | |||||||||
| JI482849.1 | |||||||||
| PPC02773_1 | |||||||||
| Associated_feature (26) | |||||||||
| Transcription_factor | WBTranscriptionFactor001153 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00107525 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00026413 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081188 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081192 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054272 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111581 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107234 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009226 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111582 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107150 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10031 | ||||||||
| Expr1031866 | |||||||||
| Expr1157821 | |||||||||
| Expr2014754 | |||||||||
| Expr2032988 | |||||||||
| Drives_construct | WBCnstr00015012 | ||||||||
| WBCnstr00035787 | |||||||||
| Construct_product | WBCnstr00015012 | ||||||||
| WBCnstr00035787 | |||||||||
| Antibody | WBAntibody00002324 | ||||||||
| Microarray_results | SMD_T27B1.2 | ||||||||
| 174623_at | |||||||||
| 188754_at | |||||||||
| A_12_P114786 | |||||||||
| Aff_T27B1.2 | |||||||||
| GPL13394_WBGene00020848 | |||||||||
| GPL13914_T27B1.2 | |||||||||
| GPL14144_T27B1.2_1286-1345_0.967_1_C | |||||||||
| GPL14144_T27B1.2_398-457_0.870_43_B | |||||||||
| GPL14144_T27B1.2_491-550_0.882_32_A | |||||||||
| GPL19516_CGZ0037061 | |||||||||
| GPL21109_T27B1.2 | |||||||||
| GPL3518_CE05028 | |||||||||
| GPL8304_CE_WBGene00020848_A | |||||||||
| GPL8304_CE_WBGene00020848_B | |||||||||
| GPL8673_T27B1_2P00728 | |||||||||
| GPL8673_T27B1_2P01092 | |||||||||
| GPL8673_T27B1_2P01251 | |||||||||
| GPL9450_T27B1.2 | |||||||||
| cea2.p.155563 | |||||||||
| Expression_cluster (205) | |||||||||
| Interaction (42) | |||||||||
| WBProcess | WBbiopr:00000006 | ||||||||
| Map_info | Map | X | Position | 24.0236 | |||||
| Positive | Positive_clone | T27B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Pos_neg_data | 8155 | |||||||
| 8156 | |||||||||
| Reference | WBPaper00001894 | ||||||||
| WBPaper00012327 | |||||||||
| WBPaper00026533 | |||||||||
| WBPaper00027228 | |||||||||
| WBPaper00034662 | |||||||||
| WBPaper00036199 | |||||||||
| WBPaper00041122 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Data extracted from Williams & Waterston 1994 | ||||||||
| Method | Gene |
