WormBase Tree Display for Gene: WBGene00003609
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WBGene00003609 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | B0280 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | nhr-10 | Person_evidence | WBPerson600 | |||||
Sequence_name | B0280.8 | ||||||||
Molecular_name | B0280.8 | ||||||||
B0280.8.1 | |||||||||
CE00815 | |||||||||
Other_name | CELE_B0280.8 | Accession_evidence | NDB | BX284603 | |||||
Public_name | nhr-10 | ||||||||
DB_info | Database | AceView | gene | 3I202 | |||||
WormQTL | gene | WBGene00003609 | |||||||
WormFlux | gene | WBGene00003609 | |||||||
NDB | locus_tag | CELE_B0280.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003609|UniProtKB=P41999 | |||||||
family | PTHR24083 | ||||||||
NCBI | gene | 175993 | |||||||
RefSeq | protein | NM_066153.7 | |||||||
SwissProt | UniProtAcc | P41999 | |||||||
TREEFAM | TREEFAM_ID | TF321623 | |||||||
UniProt_GCRP | UniProtAcc | P41999 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (35) | |||||||||
Legacy_information | NMK. Nuclear hormone receptor superfamily.[GR] | ||||||||
[C.elegansII] NMK. Nuclear hormone receptor superfamily. Sequenced: B0280.8. [GR] | |||||||||
Strain | WBStrain00034789 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (30) | |||||||||
Paralog (216) | |||||||||
Structured_description | Concise_description | nhr-10 encodes a predicted nuclear hormone receptor diverged from nuclear hormone receptors in other phyla; its mRNA is expressed throughout development with possibly lower expression from the L4 larval to adult stages, and the protein is expressed in neuronal processes. | Paper_evidence | WBPaper00003416 | |||||
WBPaper00005573 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Part of chromatin. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | B0280.8 | |||||||
Corresponding_transcript | B0280.8.1 | ||||||||
Other_sequence | CGC00280_1 | ||||||||
JI232570.1 | |||||||||
FC814817.1 | |||||||||
CBC09662_1 | |||||||||
JI219127.1 | |||||||||
CRC02082_1 | |||||||||
JO467980.1 | |||||||||
CR10871 | |||||||||
CR01764 | |||||||||
Associated_feature | WBsf716546 | ||||||||
WBsf978506 | |||||||||
WBsf992940 | |||||||||
WBsf1015194 | |||||||||
WBsf226906 | |||||||||
WBsf226907 | |||||||||
Gene_product_binds (307) | |||||||||
Transcription_factor | WBTranscriptionFactor000566 | ||||||||
Experimental_info | RNAi_result (17) | ||||||||
Expr_pattern | Expr15771 | ||||||||
Expr1013269 | |||||||||
Expr1031656 | |||||||||
Expr1143047 | |||||||||
Expr1200357 | |||||||||
Expr2014007 | |||||||||
Expr2032247 | |||||||||
Drives_construct | WBCnstr00021139 | ||||||||
WBCnstr00036004 | |||||||||
WBCnstr00042514 | |||||||||
Construct_product | WBCnstr00016577 | ||||||||
WBCnstr00016728 | |||||||||
WBCnstr00036004 | |||||||||
Microarray_results | SMD_B0280.8 | ||||||||
173903_at | |||||||||
191884_s_at | |||||||||
A_12_P108153 | |||||||||
Aff_B0280.8 | |||||||||
GPL13394_WBGene00003609 | |||||||||
GPL13914_B0280.8 | |||||||||
GPL14144_B0280.8_1090-1149_0.910_4_B | |||||||||
GPL14144_B0280.8_575-634_0.913_2_C | |||||||||
GPL14144_B0280.8_927-986_0.924_1_A | |||||||||
GPL19516_CGZ0000650 | |||||||||
GPL21109_B0280.8 | |||||||||
GPL3518_CE00815 | |||||||||
GPL8304_CE_WBGene00003609_A | |||||||||
GPL8304_CE_WBGene00003609_C | |||||||||
GPL8673_B0280_8P00032 | |||||||||
GPL8673_B0280_8P00417 | |||||||||
GPL8673_B0280_8P00511 | |||||||||
GPL9450_B0280.8 | |||||||||
cea2.3.00551 | |||||||||
cea2.p.54554 | |||||||||
Expression_cluster (119) | |||||||||
Interaction (58) | |||||||||
Product_binds_matrix | WBPmat00005560 | ||||||||
WBPmat00005561 | |||||||||
WBPmat00005575 | |||||||||
Map_info | Map | III | Position | -0.790395 | Error | 0.000401 | |||
Positive | Positive_clone | B0280 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (16) | |||||||||
Remark | Map III Position -0.700000 | ||||||||
B0280.3 removed. letter from Ann Sluder : E.coli 'homologue' | |||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |