WormBase Tree Display for Gene: WBGene00000012
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WBGene00000012 | SMap | S_parent | Sequence | C50F2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | abf-1 | |||||||
Sequence_name | C50F2.9 | ||||||||
Molecular_name | C50F2.9 | ||||||||
C50F2.9.1 | |||||||||
CE27879 | |||||||||
Other_name | CELE_C50F2.9 | Accession_evidence | NDB | BX284601 | |||||
Public_name | abf-1 | ||||||||
DB_info | Database | AceView | gene | 1E454 | |||||
WormQTL | gene | WBGene00000012 | |||||||
WormFlux | gene | WBGene00000012 | |||||||
NDB | locus_tag | CELE_C50F2.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000012|UniProtKB=G5EGC4 | |||||||
family | PTHR37971 | ||||||||
NCBI | gene | 266827 | |||||||
RefSeq | protein | NM_058852.7 | |||||||
SwissProt | UniProtAcc | G5EGC4 | |||||||
TREEFAM | TREEFAM_ID | TF322860 | |||||||
UniProt_GCRP | UniProtAcc | G5EGC4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | abf | ||||||||
Allele (16) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00018879 | ||||||||
00018880 | |||||||||
00101316 | |||||||||
Contained_in_operon | CEOP1951 | ||||||||
Ortholog (12) | |||||||||
Paralog | WBGene00000013 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | The abf-1 gene encodes a homolog of the antibacterial factor ASABF from Ascaris suum; it is closely related to abf-2. | Paper_evidence | WBPaper00005130 | |||||
WBPaper00013575 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be involved in defense response to other organism. Predicted to be located in extracellular region. Expressed in body wall musculature; intestine; neurons; and pharynx. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C50F2.9 | |||||||
Corresponding_transcript | C50F2.9.1 | ||||||||
Other_sequence | AS08547 | ||||||||
AS08543 | |||||||||
Associated_feature | WBsf219200 | ||||||||
Experimental_info | RNAi_result | WBRNAi00042934 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001904 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1810 | ||||||||
Expr1811 | |||||||||
Expr4720 | |||||||||
Expr1016927 | |||||||||
Expr1146903 | |||||||||
Expr2009079 | |||||||||
Expr2027315 | |||||||||
Drives_construct | WBCnstr00010466 | ||||||||
WBCnstr00012197 | |||||||||
WBCnstr00015898 | |||||||||
WBCnstr00037799 | |||||||||
Construct_product | WBCnstr00012197 | ||||||||
WBCnstr00037799 | |||||||||
Microarray_results (15) | |||||||||
Expression_cluster (57) | |||||||||
Interaction | WBInteraction000135489 | ||||||||
WBInteraction000503784 | |||||||||
WBInteraction000503915 | |||||||||
WBInteraction000524361 | |||||||||
WBProcess | WBbiopr:00000039 | ||||||||
Map_info | Map | I | Position | -1.93912 | Error | 0.003252 | |||
Positive | Positive_clone | C50F2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (16) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |